3-O-Glucuronide gypsogenin

Details

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Internal ID fe67faf2-4e8a-4bb0-8400-b5977ef74b6c
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name (2S,3S,4S,5R,6R)-6-[[(3S,4S,4aR,6aR,6bS,8aS,12aS,14aR,14bR)-8a-carboxy-4-formyl-4,6a,6b,11,11,14b-hexamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid
SMILES (Canonical) CC1(CCC2(CCC3(C(=CCC4C3(CCC5C4(CCC(C5(C)C=O)OC6C(C(C(C(O6)C(=O)O)O)O)O)C)C)C2C1)C)C(=O)O)C
SMILES (Isomeric) C[C@]12CC[C@@H]([C@@]([C@@H]1CC[C@@]3([C@@H]2CC=C4[C@]3(CC[C@@]5([C@H]4CC(CC5)(C)C)C(=O)O)C)C)(C)C=O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)C(=O)O)O)O)O
InChI InChI=1S/C36H54O10/c1-31(2)13-15-36(30(43)44)16-14-34(5)19(20(36)17-31)7-8-22-32(3)11-10-23(33(4,18-37)21(32)9-12-35(22,34)6)45-29-26(40)24(38)25(39)27(46-29)28(41)42/h7,18,20-27,29,38-40H,8-17H2,1-6H3,(H,41,42)(H,43,44)/t20-,21+,22+,23-,24-,25-,26+,27-,29+,32-,33-,34+,35+,36-/m0/s1
InChI Key NUSHOJSYOLRGAX-ALBXZGMBSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C36H54O10
Molecular Weight 646.80 g/mol
Exact Mass 646.37169792 g/mol
Topological Polar Surface Area (TPSA) 171.00 Ų
XlogP 4.80
Atomic LogP (AlogP) 4.33
H-Bond Acceptor 8
H-Bond Donor 5
Rotatable Bonds 5

Synonyms

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CHEMBL2043372
NUSHOJSYOLRGAX-ALBXZGMBSA-N
GYPSOGENIN 3-O-| cent-D-GLUCURONOPYRANOSIDE

2D Structure

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2D Structure of 3-O-Glucuronide gypsogenin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8910 89.10%
Caco-2 - 0.8556 85.56%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.6429 64.29%
Subcellular localzation Mitochondria 0.8302 83.02%
OATP2B1 inhibitior - 0.5832 58.32%
OATP1B1 inhibitior + 0.7648 76.48%
OATP1B3 inhibitior - 0.3294 32.94%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior + 0.6679 66.79%
BSEP inhibitior - 0.4720 47.20%
P-glycoprotein inhibitior + 0.7450 74.50%
P-glycoprotein substrate - 0.8209 82.09%
CYP3A4 substrate + 0.6907 69.07%
CYP2C9 substrate - 0.8138 81.38%
CYP2D6 substrate - 0.8769 87.69%
CYP3A4 inhibition - 0.7601 76.01%
CYP2C9 inhibition - 0.8337 83.37%
CYP2C19 inhibition - 0.8641 86.41%
CYP2D6 inhibition - 0.9340 93.40%
CYP1A2 inhibition - 0.7260 72.60%
CYP2C8 inhibition + 0.6770 67.70%
CYP inhibitory promiscuity - 0.9488 94.88%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6732 67.32%
Eye corrosion - 0.9905 99.05%
Eye irritation - 0.9221 92.21%
Skin irritation - 0.5252 52.52%
Skin corrosion - 0.9273 92.73%
Ames mutagenesis - 0.7900 79.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7049 70.49%
Micronuclear - 0.7000 70.00%
Hepatotoxicity - 0.8750 87.50%
skin sensitisation - 0.7953 79.53%
Respiratory toxicity - 0.5111 51.11%
Reproductive toxicity + 0.9333 93.33%
Mitochondrial toxicity + 0.6250 62.50%
Nephrotoxicity - 0.6584 65.84%
Acute Oral Toxicity (c) IV 0.5397 53.97%
Estrogen receptor binding + 0.6597 65.97%
Androgen receptor binding + 0.7246 72.46%
Thyroid receptor binding - 0.5571 55.71%
Glucocorticoid receptor binding + 0.6938 69.38%
Aromatase binding + 0.6921 69.21%
PPAR gamma + 0.6757 67.57%
Honey bee toxicity - 0.7985 79.85%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.6055 60.55%
Fish aquatic toxicity + 0.9905 99.05%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.16% 95.56%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.00% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.59% 91.11%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.09% 97.09%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 86.16% 96.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.04% 89.00%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 83.71% 93.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.64% 95.89%
CHEMBL1293249 Q13887 Kruppel-like factor 5 82.69% 86.33%
CHEMBL221 P23219 Cyclooxygenase-1 82.32% 90.17%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 82.03% 96.77%
CHEMBL1994 P08235 Mineralocorticoid receptor 81.58% 100.00%
CHEMBL5028 O14672 ADAM10 80.90% 97.50%
CHEMBL3714130 P46095 G-protein coupled receptor 6 80.60% 97.36%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Eleutherococcus senticosus
Salicornia depressa
Salicornia europaea
Silene vulgaris

Cross-Links

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PubChem 13919535
NPASS NPC294112
ChEMBL CHEMBL2043372
LOTUS LTS0088901
wikiData Q105186006