(2r,3r,5s,6r)-2,6-Bis(hydroxymethyl)piperidine-3,4,5-triol

Details

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Internal ID f3c82ee1-258a-4c09-8f03-986632287d2d
Taxonomy Organoheterocyclic compounds > Piperidines
IUPAC Name (2R,3S,5R,6R)-2,6-bis(hydroxymethyl)piperidine-3,4,5-triol
SMILES (Canonical) C(C1C(C(C(C(N1)CO)O)O)O)O
SMILES (Isomeric) C([C@@H]1[C@H](C([C@H]([C@H](N1)CO)O)O)O)O
InChI InChI=1S/C7H15NO5/c9-1-3-5(11)7(13)6(12)4(2-10)8-3/h3-13H,1-2H2/t3-,4-,5-,6+,7?/m1/s1
InChI Key CLVUFWXGNIFGNC-QTSLKERKSA-N
Popularity 21 references in papers

Physical and Chemical Properties

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Molecular Formula C7H15NO5
Molecular Weight 193.20 g/mol
Exact Mass 193.09502258 g/mol
Topological Polar Surface Area (TPSA) 113.00 Ų
XlogP -2.40
Atomic LogP (AlogP) -3.61
H-Bond Acceptor 6
H-Bond Donor 6
Rotatable Bonds 2

Synonyms

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119557-99-2
Homonojirimycin
a-Homonojirimycin
Hnj cpd
(2r,3r,5s,6r)-2,6-bis(hydroxymethyl)piperidine-3,4,5-triol
alpha-Homoallonojirimycin
CHEMBL501355
CHEMBL2111688
2,6-Bis-hydroxymethyl-piperidine-3,4,5-triol
(2R,3S,4R,5R,6R)-2,6-bis(hydroxymethyl)piperidine-3,4,5-triol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of (2r,3r,5s,6r)-2,6-Bis(hydroxymethyl)piperidine-3,4,5-triol

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5111 51.11%
Caco-2 - 0.9714 97.14%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability + 0.6429 64.29%
Subcellular localzation Mitochondria 0.4518 45.18%
OATP2B1 inhibitior - 0.8526 85.26%
OATP1B1 inhibitior + 0.9673 96.73%
OATP1B3 inhibitior + 0.9450 94.50%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior - 0.9675 96.75%
P-glycoprotein inhibitior - 0.9741 97.41%
P-glycoprotein substrate - 0.9582 95.82%
CYP3A4 substrate - 0.7534 75.34%
CYP2C9 substrate - 0.8129 81.29%
CYP2D6 substrate + 0.4032 40.32%
CYP3A4 inhibition - 0.9755 97.55%
CYP2C9 inhibition - 0.9356 93.56%
CYP2C19 inhibition - 0.9641 96.41%
CYP2D6 inhibition - 0.9197 91.97%
CYP1A2 inhibition - 0.9290 92.90%
CYP2C8 inhibition - 0.9749 97.49%
CYP inhibitory promiscuity - 0.9877 98.77%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9100 91.00%
Carcinogenicity (trinary) Non-required 0.7690 76.90%
Eye corrosion - 0.9744 97.44%
Eye irritation - 0.9460 94.60%
Skin irritation - 0.7261 72.61%
Skin corrosion - 0.8954 89.54%
Ames mutagenesis - 0.6600 66.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6137 61.37%
Micronuclear + 0.6300 63.00%
Hepatotoxicity - 0.7785 77.85%
skin sensitisation - 0.8557 85.57%
Respiratory toxicity - 0.8444 84.44%
Reproductive toxicity + 0.6778 67.78%
Mitochondrial toxicity + 0.7500 75.00%
Nephrotoxicity + 0.4612 46.12%
Acute Oral Toxicity (c) III 0.6463 64.63%
Estrogen receptor binding - 0.8186 81.86%
Androgen receptor binding - 0.7456 74.56%
Thyroid receptor binding - 0.7406 74.06%
Glucocorticoid receptor binding - 0.6675 66.75%
Aromatase binding - 0.7716 77.16%
PPAR gamma - 0.7892 78.92%
Honey bee toxicity - 0.8901 89.01%
Biodegradation + 0.7500 75.00%
Crustacea aquatic toxicity - 0.8500 85.00%
Fish aquatic toxicity - 0.9864 98.64%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL2608 P10253 Lysosomal alpha-glucosidase 100 nM
IC50
via Super-PRED

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.05% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.51% 97.09%
CHEMBL1907589 P17787 Neuronal acetylcholine receptor; alpha4/beta2 84.22% 94.55%
CHEMBL253 P34972 Cannabinoid CB2 receptor 81.17% 97.25%
CHEMBL226 P30542 Adenosine A1 receptor 80.19% 95.93%
CHEMBL2996 Q05655 Protein kinase C delta 80.08% 97.79%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Commelina communis
Hyacinthus orientalis
Lonchocarpus heptaphyllus
Omphalea diandra

Cross-Links

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PubChem 159496
NPASS NPC106753
LOTUS LTS0019868
wikiData Q82896842