(20S)-Protopanaxadiol

Details

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Internal ID ba8edc35-65ef-4b4b-85a7-6229839303c6
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name (3S,5R,8R,9R,10R,12R,13R,14R,17S)-17-[(2S)-2-hydroxy-6-methylhept-5-en-2-yl]-4,4,8,10,14-pentamethyl-2,3,5,6,7,9,11,12,13,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,12-diol
SMILES (Canonical) CC(=CCCC(C)(C1CCC2(C1C(CC3C2(CCC4C3(CCC(C4(C)C)O)C)C)O)C)O)C
SMILES (Isomeric) CC(=CCC[C@@](C)([C@H]1CC[C@@]2([C@@H]1[C@@H](C[C@H]3[C@]2(CC[C@@H]4[C@@]3(CC[C@@H](C4(C)C)O)C)C)O)C)O)C
InChI InChI=1S/C30H52O3/c1-19(2)10-9-14-30(8,33)20-11-16-29(7)25(20)21(31)18-23-27(5)15-13-24(32)26(3,4)22(27)12-17-28(23,29)6/h10,20-25,31-33H,9,11-18H2,1-8H3/t20-,21+,22-,23+,24-,25-,27-,28+,29+,30-/m0/s1
InChI Key PYXFVCFISTUSOO-HKUCOEKDSA-N
Popularity 251 references in papers

Physical and Chemical Properties

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Molecular Formula C30H52O3
Molecular Weight 460.70 g/mol
Exact Mass 460.39164552 g/mol
Topological Polar Surface Area (TPSA) 60.70 Ų
XlogP 7.20
Atomic LogP (AlogP) 6.50
H-Bond Acceptor 3
H-Bond Donor 3
Rotatable Bonds 4

Synonyms

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30636-90-9
20-Epiprotopanaxadiol
Protopanaxadiol
20(S)-APPD
20(S)-protopanaxadiol
MR8AEF5T1N
CHEMBL375563
CHEBI:75950
Dammar-24-ene-3,12,20-triol, (3beta,12beta)-
dammar-24-ene-3beta,12beta,20-triol
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of (20S)-Protopanaxadiol

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9972 99.72%
Caco-2 - 0.5776 57.76%
Blood Brain Barrier + 0.5750 57.50%
Human oral bioavailability - 0.5571 55.71%
Subcellular localzation Mitochondria 0.6200 62.00%
OATP2B1 inhibitior - 0.5766 57.66%
OATP1B1 inhibitior + 0.8571 85.71%
OATP1B3 inhibitior + 0.9583 95.83%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.6250 62.50%
BSEP inhibitior + 0.8440 84.40%
P-glycoprotein inhibitior - 0.5666 56.66%
P-glycoprotein substrate - 0.8567 85.67%
CYP3A4 substrate + 0.6714 67.14%
CYP2C9 substrate - 0.5811 58.11%
CYP2D6 substrate - 0.7340 73.40%
CYP3A4 inhibition - 0.7436 74.36%
CYP2C9 inhibition - 0.9200 92.00%
CYP2C19 inhibition - 0.8930 89.30%
CYP2D6 inhibition - 0.9560 95.60%
CYP1A2 inhibition - 0.9403 94.03%
CYP2C8 inhibition - 0.6348 63.48%
CYP inhibitory promiscuity - 0.5772 57.72%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9300 93.00%
Carcinogenicity (trinary) Non-required 0.6309 63.09%
Eye corrosion - 0.9949 99.49%
Eye irritation - 0.9262 92.62%
Skin irritation + 0.5627 56.27%
Skin corrosion - 0.9611 96.11%
Ames mutagenesis - 0.6800 68.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6689 66.89%
Micronuclear - 0.9200 92.00%
Hepatotoxicity - 0.6740 67.40%
skin sensitisation + 0.5190 51.90%
Respiratory toxicity + 0.5667 56.67%
Reproductive toxicity + 0.9778 97.78%
Mitochondrial toxicity + 0.9875 98.75%
Nephrotoxicity - 0.7627 76.27%
Acute Oral Toxicity (c) I 0.4993 49.93%
Estrogen receptor binding + 0.7169 71.69%
Androgen receptor binding + 0.7200 72.00%
Thyroid receptor binding + 0.6458 64.58%
Glucocorticoid receptor binding + 0.7347 73.47%
Aromatase binding + 0.7868 78.68%
PPAR gamma + 0.6695 66.95%
Honey bee toxicity - 0.6076 60.76%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity + 0.6500 65.00%
Fish aquatic toxicity + 0.9901 99.01%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 23600 nM
IC50
PMID: 23177789

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 97.12% 97.25%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 94.23% 82.69%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.08% 97.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.09% 91.11%
CHEMBL2996 Q05655 Protein kinase C delta 90.30% 97.79%
CHEMBL1994 P08235 Mineralocorticoid receptor 89.18% 100.00%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 88.88% 95.58%
CHEMBL226 P30542 Adenosine A1 receptor 88.36% 95.93%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 87.78% 96.09%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.83% 95.89%
CHEMBL241 Q14432 Phosphodiesterase 3A 86.64% 92.94%
CHEMBL1937 Q92769 Histone deacetylase 2 84.57% 94.75%
CHEMBL1914 P06276 Butyrylcholinesterase 84.23% 95.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 83.05% 94.45%
CHEMBL2581 P07339 Cathepsin D 82.98% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.30% 86.33%
CHEMBL4227 P25090 Lipoxin A4 receptor 81.29% 100.00%
CHEMBL1977 P11473 Vitamin D receptor 80.46% 99.43%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 80.21% 95.50%

Cross-Links

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PubChem 11213350
NPASS NPC273410
ChEMBL CHEMBL375563
LOTUS LTS0134269
wikiData Q7252079