(1Z,4Z)-germacrene B

Details

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Internal ID eb819042-6074-4475-a993-7bf047df169f
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Sesquiterpenoids > Germacrane sesquiterpenoids
IUPAC Name (1Z,5Z)-1,5-dimethyl-8-propan-2-ylidenecyclodeca-1,5-diene
SMILES (Canonical) CC1=CCCC(=CCC(=C(C)C)CC1)C
SMILES (Isomeric) C/C/1=C/CC/C(=C\CC(=C(C)C)CC1)/C
InChI InChI=1S/C15H24/c1-12(2)15-10-8-13(3)6-5-7-14(4)9-11-15/h6,9H,5,7-8,10-11H2,1-4H3/b13-6-,14-9-
InChI Key GXEGJTGWYVZSNR-OMQMMEOVSA-N
Popularity 5 references in papers

Physical and Chemical Properties

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Molecular Formula C15H24
Molecular Weight 204.35 g/mol
Exact Mass 204.187800766 g/mol
Topological Polar Surface Area (TPSA) 0.00 Ų
XlogP 4.10
Atomic LogP (AlogP) 5.18
H-Bond Acceptor 0
H-Bond Donor 0
Rotatable Bonds 0

Synonyms

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(1Z,5Z)-8-isopropylidene-1,5-dimethylcyclodeca-1,5-diene
(1Z,5Z)-1,5-dimethyl-8-propan-2-ylidenecyclodeca-1,5-diene
germacreneB,1,5-dimethyl-8-(1-methylethylidene)-1,5-cyclodecadiene
15423-57-1
(1Z,4Z)-germacra-1(10),4,7(11)-triene (1Z,5Z)-1,5-dimethyl-8-(propan-2-ylidene)cyclodeca-1,5-diene
trans,trans-germacrene B
ML9S6L9M3X
Germacratriene
(E,E)-germacra-1(10),4,7(11)-triene
(1E,4E)-germacra-1(10),4,7(11)-triene
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of (1Z,4Z)-germacrene B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9933 99.33%
Caco-2 + 0.9753 97.53%
Blood Brain Barrier + 0.9500 95.00%
Human oral bioavailability + 0.6286 62.86%
Subcellular localzation Lysosomes 0.4255 42.55%
OATP2B1 inhibitior - 0.8468 84.68%
OATP1B1 inhibitior + 0.9642 96.42%
OATP1B3 inhibitior + 0.9557 95.57%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior - 0.7227 72.27%
P-glycoprotein inhibitior - 0.9560 95.60%
P-glycoprotein substrate - 0.9643 96.43%
CYP3A4 substrate - 0.6160 61.60%
CYP2C9 substrate - 0.8078 80.78%
CYP2D6 substrate - 0.7601 76.01%
CYP3A4 inhibition - 0.9515 95.15%
CYP2C9 inhibition - 0.8556 85.56%
CYP2C19 inhibition - 0.8447 84.47%
CYP2D6 inhibition - 0.9427 94.27%
CYP1A2 inhibition - 0.7131 71.31%
CYP2C8 inhibition - 0.9384 93.84%
CYP inhibitory promiscuity - 0.7471 74.71%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.6800 68.00%
Carcinogenicity (trinary) Warning 0.4922 49.22%
Eye corrosion + 0.5247 52.47%
Eye irritation + 0.9130 91.30%
Skin irritation + 0.7729 77.29%
Skin corrosion - 0.9586 95.86%
Ames mutagenesis - 0.7900 79.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6595 65.95%
Micronuclear - 0.9900 99.00%
Hepatotoxicity + 0.7625 76.25%
skin sensitisation + 0.9263 92.63%
Respiratory toxicity - 0.6444 64.44%
Reproductive toxicity - 0.7444 74.44%
Mitochondrial toxicity - 0.6625 66.25%
Nephrotoxicity + 0.5282 52.82%
Acute Oral Toxicity (c) III 0.7428 74.28%
Estrogen receptor binding - 0.9360 93.60%
Androgen receptor binding - 0.7088 70.88%
Thyroid receptor binding - 0.8379 83.79%
Glucocorticoid receptor binding - 0.7939 79.39%
Aromatase binding - 0.7851 78.51%
PPAR gamma - 0.7466 74.66%
Honey bee toxicity - 0.9610 96.10%
Biodegradation - 0.5000 50.00%
Crustacea aquatic toxicity + 0.5800 58.00%
Fish aquatic toxicity + 0.9944 99.44%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 90.28% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 87.24% 96.09%
CHEMBL4208 P20618 Proteasome component C5 84.41% 90.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.23% 95.56%
CHEMBL2581 P07339 Cathepsin D 80.82% 98.95%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Asarum sieboldii
Atractylodes lancea
Platycladus orientalis

Cross-Links

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PubChem 6370843
NPASS NPC268477
LOTUS LTS0205195
wikiData Q27121630