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Oryza punctata

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Table of Contents

Details
Description
Synonyms
Common Names
Subtypes (subspecies, varieties, subvarieties, forms)
Germination/Propagation
Distribution
Links to other databases
Genome
Scientific Literature
Phytochemical Profile
Biological Material
Contributors
Collections

Details Top

Internal ID UUID64403199bf5ff538699168
Scientific name Oryza punctata
Authority Kotschy ex Steud.
First published in Syn. Pl. Glumac. 1: 3 (1853)

Description Top

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Synonyms Top

Scientific name Authority First published in
Oryza eichingeri var. longiaristata Peter Repert. Spec. Nov. Regni Veg. Beih. 40(1): 251 1930
Oryza sativa var. punctata (Kotschy ex Steud.) Kotschy Ber. Deutsch. Bot. Ges. 44: 165. 1926
Oryza schweinfurthiana Prodoehl Bot. Arch. 1: 231 (1922)

Common names Top

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Language Common/alternative name
English red rice
Chinese 東非野生稻

Subspecies (abbr. subsp./ssp.) Top

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Varieties (abbr. var.) Top

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Subvarieties (abbr. subvar.) Top

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Forms (abbr. f.) Top

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Germination/Propagation Top

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No germination or propagation data was added yet.

Distribution (via POWO/KEW) Top

Legend for the distribution data:
- Doubtful data
- Extinct
- Introduced
- Native
  • Africa
    • East Tropical Africa
      • Kenya
      • Tanzania
      • Uganda
    • Northeast Tropical Africa
      • Chad
      • Sudan
    • South Tropical Africa
      • Zimbabwe
    • Southern Africa
      • Kwazulu-Natal
      • Swaziland
    • West Tropical Africa
      • Benin
      • Ghana
      • Ivory Coast
      • Nigeria
      • Togo
    • West-central Tropical Africa
      • Cameroon
      • Central African Republic
      • Congo
      • Zaïre
    • Western Indian Ocean
      • Madagascar

Links to other databases Top

Suggest others/fix!
Database ID/link to page
World Flora Online wfo-0000882431
USDA Plants ORPU13
Tropicos 25509795
KEW urn:lsid:ipni.org:names:410110-1
The Plant List kew-426691
Open Tree Of Life 709892
NCBI Taxonomy 4537
IUCN Red List 21347040
IPNI 410110-1
iNaturalist 208822
GBIF 2703461
Freebase /m/012sdh1k
EPPO ORYPU
EOL 1115872
USDA GRIN 26074
Wikipedia Oryza_punctata

Genomes (via NCBI) Top

Below is displayed the reference genome only!
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Accession Assembly
Name Level Submitter Released Coverage Size
GCA_000573905.2 OpunRS2 Chromosome The Oryza Map Alignment Project (OMAP) 2021-03-10 165.0x 402.82 Mb

Scientific Literature Top

Below are displayed the latest 15 articles published in PMC (PubMed Central®) and other sources (DOI number only)!
If you wish to see all the related articles click here.
Title Authors Publication Released IDs
In silico analysis of the Seven IN Absentia (SINA) genes in bread wheat sheds light on their structure in plants Roche J, Guérin C, Dupuits C, Elmodafar C, Goupil P, Mouzeyar S PLoS One 21-Dec-2023
PMCID:PMC10734943
doi:10.1371/journal.pone.0295021
PMID:38127955
Genomic landscape of the OsTPP7 gene in its haplotype diversity and association with anaerobic germination tolerance in rice Aung KM, Oo WH, Maung TZ, Min MH, Somsri A, Nam J, Kim KW, Nawade B, Lee CY, Chu SH, Park YJ Front Plant Sci 25-Jul-2023
PMCID:PMC10407808
doi:10.3389/fpls.2023.1225445
PMID:37560030
Rapid Identification by Resequencing-Based QTL Mapping of a Novel Allele RGA1-FH Decreasing Grain Length in a Rice Restorer Line ‘Fuhui212’ Ma S, Zhong Y, Zheng S, He Y, Yang S, Wang L, Traw MB, Zhang Q, Zhang X Int J Mol Sci 28-Jun-2023
PMCID:PMC10341677
doi:10.3390/ijms241310746
PMID:37445924
Phylogenomic Analysis of micro-RNA Involved in Juvenile to Flowering-Stage Transition in Photophilic Rice and Its Sister Species Dash PK, Gupta P, Sreevathsa R, Pradhan SK, Sanjay TD, Mohanty MR, Roul PK, Singh NK, Rai R Cells 12-May-2023
PMCID:PMC10216681
doi:10.3390/cells12101370
PMID:37408207
Genome-Wide Identification and Expression Pattern Analysis of Dirigent Members in the Genus Oryza Duan W, Xue B, He Y, Liao S, Li X, Li X, Liang YK Int J Mol Sci 13-Apr-2023
PMCID:PMC10138954
doi:10.3390/ijms24087189
PMID:37108350
PSReliP: an integrated pipeline for analysis and visualization of population structure and relatedness based on genome-wide genetic variant data Solovieva E, Sakai H BMC Bioinformatics 05-Apr-2023
PMCID:PMC10074814
doi:10.1186/s12859-023-05169-4
PMID:37020193
Genome-wide identification and comparative analyses of key genes involved in C4 photosynthesis in five main gramineous crops Chen L, Yang Y, Zhao Z, Lu S, Lu Q, Cui C, Parry MA, Hu YG Front Plant Sci 13-Mar-2023
PMCID:PMC10040670
doi:10.3389/fpls.2023.1134170
PMID:36993845
Genomic Survey of Flavin Monooxygenases in Wild and Cultivated Rice Provides Insight into Evolution and Functional Diversities Gaba Y, Bhowal B, Pareek A, Singla-Pareek SL Int J Mol Sci 20-Feb-2023
PMCID:PMC9960948
doi:10.3390/ijms24044190
PMID:36835601
Oryzalexin S biosynthesis: a cross-stitched disappearing pathway Zhao L, Oyagbenro R, Feng Y, Xu M, Peters RJ aBIOTECH 19-Jan-2023
PMCID:PMC10199973
doi:10.1007/s42994-022-00092-3
PMID:37220540
Uncovering natural allelic and structural variants of OsCENH3 gene by targeted resequencing and in silico mining in genus Oryza Kaur K, Neelam K, Singh J, Malik P, Singh K Sci Rep 16-Jan-2023
PMCID:PMC9842635
doi:10.1038/s41598-023-28053-w
PMID:36646847
PlantExp: a platform for exploration of gene expression and alternative splicing based on public plant RNA-seq samples Liu J, Zhang Y, Zheng Y, Zhu Y, Shi Y, Guan Z, Lang K, Shen D, Huang W, Dou D Nucleic Acids Res 22-Oct-2022
PMCID:PMC9825497
doi:10.1093/nar/gkac917
PMID:36271793
Miniature Inverted-repeat Transposable Elements Drive Rapid MicroRNA Diversification in Angiosperms Guo Z, Kuang Z, Tao Y, Wang H, Wan M, Hao C, Shen F, Yang X, Li L Mol Biol Evol 12-Oct-2022
PMCID:PMC9641971
doi:10.1093/molbev/msac224
PMID:36223453
Comparing Essentiality of SOS1-Mediated Na+ Exclusion in Salinity Tolerance between Cultivated and Wild Rice Species Shahzad B, Shabala L, Zhou M, Venkataraman G, Solis CA, Page D, Chen ZH, Shabala S Int J Mol Sci 31-Aug-2022
PMCID:PMC9456175
doi:10.3390/ijms23179900
PMID:36077294
Fujian cytoplasmic male sterility and the fertility restorer gene OsRf19 provide a promising breeding system for hybrid rice Jiang H, Lu Q, Qiu S, Yu H, Wang Z, Yu Z, Lu Y, Wang L, Xia F, Wu Y, Li F, Zhang Q, Liu G, Song D, Ma C, Ding Q, Zhang X, Zhang L, Zhang X, Li X, Zhang J, Xiao J, Li X, Wang N, Ouyang Y, Zhou F, Zhang Q Proc Natl Acad Sci U S A 15-Aug-2022
PMCID:PMC9407659
doi:10.1073/pnas.2208759119
PMID:35969741
The Original Form of C4-Photosynthetic Phosphoenolpyruvate Carboxylase Is Retained in Pooids but Lost in Rice Yamamoto N, Tong W, Lv B, Peng Z, Yang Z Front Plant Sci 25-Jul-2022
PMCID:PMC9358456
doi:10.3389/fpls.2022.905894
PMID:35958195

Phytochemical Profile Top

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Below are displayed the proven (via scientific papers) natural compounds!
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Name PubChem ID Canonical SMILES MW Found in Proof
> Organic acids and derivatives / Carboxylic acids and derivatives / Amino acids, peptides, and analogues / Peptides / Dipeptides
D-alanyl-D-alanine 5460362 Click to see CC(C(=O)NC(C)C(=O)O)N 160.17 unknown https://doi.org/10.1016/0031-9422(86)80098-X
D-Alanylglycine 6992371 Click to see CC(C(=O)NCC(=O)O)N 146.14 unknown https://doi.org/10.1016/0031-9422(86)80098-X

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Collections Top

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