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Avena atlantica

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Table of Contents

Details
Description
Synonyms
Common Names
Subtypes (subspecies, varieties, subvarieties, forms)
Germination/Propagation
Distribution
Links to other databases
Genome
Scientific Literature
Phytochemical Profile
Biological Material
Contributors
Collections

Details Top

Internal ID UUID64402ec9cb533582093960
Scientific name Avena atlantica
Authority B.R.Baum & Fedak
First published in Canad. J. Bot. 63: 1057 (1985)

Description Top

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Synonyms Top

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Common names Top

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Subspecies (abbr. subsp./ssp.) Top

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Varieties (abbr. var.) Top

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Subvarieties (abbr. subvar.) Top

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Forms (abbr. f.) Top

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Germination/Propagation Top

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Distribution (via POWO/KEW) Top

Legend for the distribution data:
- Doubtful data
- Extinct
- Introduced
- Native

Links to other databases Top

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Database ID/link to page
World Flora Online wfo-0000851687
Tropicos 25515515
KEW urn:lsid:ipni.org:names:929034-1
Open Tree Of Life 29153
NCBI Taxonomy 366594
IPNI 929034-1
GBIF 4155060
USDA GRIN 403351

Genomes (via NCBI) Top

Below is displayed the reference genome only!
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Accession Assembly
Name Level Submitter Released Coverage Size
GCA_910589765.1 Avena_atlantica_CC7277_v1_assembly Chromosome Leibniz Institute of Plant Genetics and Crop Plant Research 2022-09-22 200.0x 3.43 Gb

Scientific Literature Top

Below are displayed the latest 15 articles published in PMC (PubMed Central®) and other sources (DOI number only)!
If you wish to see all the related articles click here.
Title Authors Publication Released IDs
Genome-wide expansion and reorganization during grass evolution: from 30 Mb chromosomes in rice and Brachypodium to 550 Mb in Avena Liu Q, Ye L, Li M, Wang Z, Xiong G, Ye Y, Tu T, Schwarzacher T, Heslop-Harrison JS BMC Plant Biol 08-Dec-2023
PMCID:PMC10704644
doi:10.1186/s12870-023-04644-7
PMID:38062402
Non–B-form DNA tends to form in centromeric regions and has undergone changes in polyploid oat subgenomes Liu Q, Yi C, Zhang Z, Su H, Liu C, Huang Y, Li W, Hu X, Liu C, Birchler JA, Liu Y, Han F Proc Natl Acad Sci U S A 27-Dec-2022
PMCID:PMC9910436
doi:10.1073/pnas.2211683120
PMID:36574697
Archetypes of inflorescence: genome-wide association networks of panicle morphometric, growth, and disease variables in a multiparent oat population Carlson CH, Fiedler JD, Naraghi SM, Nazareno ES, Ardayfio NK, McMullen MS, Kianian SF Genetics 15-Sep-2022
PMCID:PMC9910404
doi:10.1093/genetics/iyac128
PMID:36106985
GGDB: A Grameneae genome alignment database of homologous genes hierarchically related to evolutionary events Yang Q, Liu T, Wu T, Lei T, Li Y, Wang X Plant Physiol 05-Jul-2022
PMCID:PMC9434254
doi:10.1093/plphys/kiac297
PMID:35789395
GrainGenes: a data-rich repository for small grains genetics and genomics Yao E, Blake VC, Cooper L, Wight CP, Michel S, Cagirici HB, Lazo GR, Birkett CL, Waring DJ, Jannink JL, Holmes I, Waters AJ, Eickholt DP, Sen TZ Database (Oxford) 25-May-2022
PMCID:PMC9216595
doi:10.1093/database/baac034
PMID:35616118
Genome analysis in Avena sativa reveals hidden breeding barriers and opportunities for oat improvement Tinker NA, Wight CP, Bekele WA, Yan W, Jellen EN, Renhuldt NT, Sirijovski N, Lux T, Spannagl M, Mascher M Commun Biol 18-May-2022
PMCID:PMC9117302
doi:10.1038/s42003-022-03256-5
PMID:35585176
A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae Wang Z, Rouard M, Biswas MK, Droc G, Cui D, Roux N, Baurens FC, Ge XJ, Schwarzacher T, Heslop-Harrison P(, Liu Q Gigascience 30-Apr-2022
PMCID:PMC9055855
doi:10.1093/gigascience/giac027
PMID:35488861
New Insights into the Genomic Structure of Avena L.: Comparison of the Divergence of A-Genome and One C-Genome Oat Species Gnutikov AA, Nosov NN, Loskutov IG, Blinova EV, Shneyer VS, Probatova NS, Rodionov AV Plants (Basel) 19-Apr-2022
PMCID:PMC9102028
doi:10.3390/plants11091103
PMID:35567104
GrainGenes: Tools and Content to Assist Breeders Improving Oat Quality Blake VC, Wight CP, Yao E, Sen TZ Foods 23-Mar-2022
PMCID:PMC8998097
doi:10.3390/foods11070914
PMID:35407001
Comparative sequencing and SNP marker validation for oat stem rust resistance gene Pg6 in a diverse collection of Avena accessions Gordon TC, Jin Y, Tinker NA, Bekele WA, Gale S, Bockelman H, Bonman JM Theor Appl Genet 03-Feb-2022
PMCID:PMC9033690
doi:10.1007/s00122-022-04032-z
PMID:35113191
Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals Li Y, Leveau A, Zhao Q, Feng Q, Lu H, Miao J, Xue Z, Martin AC, Wegel E, Wang J, Orme A, Rey MD, Karafiátová M, Vrána J, Steuernagel B, Joynson R, Owen C, Reed J, Louveau T, Stephenson MJ, Zhang L, Huang X, Huang T, Fan D, Zhou C, Tian Q, Li W, Lu Y, Chen J, Zhao Y, Lu Y, Zhu C, Liu Z, Polturak G, Casson R, Hill L, Moore G, Melton R, Hall N, Wulff BB, Doležel J, Langdon T, Han B, Osbourn A Nat Commun 07-May-2021
PMCID:PMC8105312
doi:10.1038/s41467-021-22920-8
PMID:33963185
Population genomics of Mediterranean oat (A. sativa) reveals high genetic diversity and three loci for heading date Canales FJ, Montilla-Bascón G, Bekele WA, Howarth CJ, Langdon T, Rispail N, Tinker NA, Prats E Theor Appl Genet 26-Mar-2021
PMCID:PMC8263550
doi:10.1007/s00122-021-03805-2
PMID:33770189
SSRgenotyper: A simple sequence repeat genotyping application for whole‐genome resequencing and reduced representational sequencing projects Lewis DH, Jarvis DE, Maughan PJ Appl Plant Sci 03-Dec-2020
PMCID:PMC7742204
doi:10.1002/aps3.11402
PMID:33344093
Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny Liu Q, Li X, Li M, Xu W, Schwarzacher T, Heslop-Harrison JS BMC Plant Biol 02-Sep-2020
PMCID:PMC7466839
doi:10.1186/s12870-020-02621-y
PMID:32878602
A noncanonical vacuolar sugar transferase required for biosynthesis of antimicrobial defense compounds in oat Orme A, Louveau T, Stephenson MJ, Appelhagen I, Melton R, Cheema J, Li Y, Zhao Q, Zhang L, Fan D, Tian Q, Vickerstaff RJ, Langdon T, Han B, Osbourn A Proc Natl Acad Sci U S A 05-Dec-2019
PMCID:PMC6936528
doi:10.1073/pnas.1914652116
PMID:31806756

Phytochemical Profile Top

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Collections Top

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