Yardenone

Details

Top
Internal ID 6d953531-905e-4526-87cd-535fa2d22e33
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name (5'S,5aR,6S,7S,9aS)-5'-[(5aS,6S,8aS)-2,2,5a,6-tetramethyl-3-oxo-5,7,8,8a-tetrahydro-4H-cyclopenta[b]oxepin-6-yl]-2,2,5a,7-tetramethylspiro[4,5,7,8,9,9a-hexahydrobenzo[b]oxepine-6,2'-oxolane]-3-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C30H48O5/c1-19-9-10-22-29(8,16-12-21(32)25(2,3)33-22)30(19)18-14-24(35-30)28(7)17-13-23-27(28,6)15-11-20(31)26(4,5)34-23/h19,22-24H,9-18H2,1-8H3/t19-,22-,23-,24-,27+,28+,29+,30-/m0/s1
InChI Key QITDIIMEVNRCKY-YDAHQQQXSA-N
Popularity 5 references in papers

Physical and Chemical Properties

Top
Molecular Formula C30H48O5
Molecular Weight 488.70 g/mol
Exact Mass 488.35017463 g/mol
Topological Polar Surface Area (TPSA) 61.80 Ų
XlogP 5.10
Atomic LogP (AlogP) 6.20
H-Bond Acceptor 5
H-Bond Donor 0
Rotatable Bonds 1

Synonyms

Top
(5'S,5aR,6S,7S,9aS)-5'-((5aS,6S,8aS)-2,2,5a,6-tetramethyl-3-oxo-5,7,8,8a-tetrahydro-4H-cyclopenta(b)oxepin-6-yl)-2,2,5a,7-tetramethylspiro(4,5,7,8,9,9a-hexahydrobenzo(b)oxepine-6,2'-oxolane)-3-one
(5'S,5aR,6S,7S,9aS)-5'-[(5aS,6S,8aS)-2,2,5a,6-tetramethyl-3-oxo-5,7,8,8a-tetrahydro-4H-cyclopenta[b]oxepin-6-yl]-2,2,5a,7-tetramethylspiro[4,5,7,8,9,9a-hexahydrobenzo[b]oxepine-6,2'-oxolane]-3-one
RefChem:195607
205750-25-0
CHEMBL457936
BDBM50478861

2D Structure

Top
2D Structure of Yardenone

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9886 98.86%
Caco-2 - 0.6024 60.24%
Blood Brain Barrier + 0.7500 75.00%
Human oral bioavailability + 0.6714 67.14%
Subcellular localzation Mitochondria 0.7304 73.04%
OATP2B1 inhibitior - 0.7215 72.15%
OATP1B1 inhibitior + 0.9189 91.89%
OATP1B3 inhibitior + 0.9663 96.63%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6750 67.50%
BSEP inhibitior + 0.7973 79.73%
P-glycoprotein inhibitior + 0.6384 63.84%
P-glycoprotein substrate - 0.9117 91.17%
CYP3A4 substrate + 0.5689 56.89%
CYP2C9 substrate - 0.7954 79.54%
CYP2D6 substrate - 0.7557 75.57%
CYP3A4 inhibition - 0.8262 82.62%
CYP2C9 inhibition - 0.8734 87.34%
CYP2C19 inhibition - 0.8690 86.90%
CYP2D6 inhibition - 0.9605 96.05%
CYP1A2 inhibition - 0.7704 77.04%
CYP2C8 inhibition - 0.8219 82.19%
CYP inhibitory promiscuity - 0.9659 96.59%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9200 92.00%
Carcinogenicity (trinary) Non-required 0.6254 62.54%
Eye corrosion - 0.9783 97.83%
Eye irritation - 0.8874 88.74%
Skin irritation - 0.6307 63.07%
Skin corrosion - 0.7256 72.56%
Ames mutagenesis - 0.7100 71.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6026 60.26%
Micronuclear - 0.8500 85.00%
Hepatotoxicity + 0.5177 51.77%
skin sensitisation - 0.8051 80.51%
Respiratory toxicity - 0.5000 50.00%
Reproductive toxicity + 0.5333 53.33%
Mitochondrial toxicity + 0.6250 62.50%
Nephrotoxicity + 0.5991 59.91%
Acute Oral Toxicity (c) III 0.4897 48.97%
Estrogen receptor binding + 0.6302 63.02%
Androgen receptor binding + 0.6885 68.85%
Thyroid receptor binding + 0.6011 60.11%
Glucocorticoid receptor binding + 0.6894 68.94%
Aromatase binding + 0.7679 76.79%
PPAR gamma + 0.5919 59.19%
Honey bee toxicity - 0.8667 86.67%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity + 0.6700 67.00%
Fish aquatic toxicity + 0.9596 95.96%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 91.89% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 88.32% 95.56%
CHEMBL1937 Q92769 Histone deacetylase 2 87.37% 94.75%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.78% 97.09%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 85.20% 99.23%
CHEMBL2581 P07339 Cathepsin D 85.16% 98.95%
CHEMBL1994 P08235 Mineralocorticoid receptor 84.79% 100.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 84.08% 96.09%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.43% 94.00%
CHEMBL259 P32245 Melanocortin receptor 4 83.03% 95.38%
CHEMBL5697 Q9GZT9 Egl nine homolog 1 82.45% 93.40%
CHEMBL3351 Q13085 Acetyl-CoA carboxylase 1 82.21% 93.04%
CHEMBL241 Q14432 Phosphodiesterase 3A 81.03% 92.94%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 15378863
LOTUS LTS0073721
wikiData Q104399516