Withalongolide D

Details

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Internal ID eebb99ec-9e91-434b-9670-f5befb2e69ec
Taxonomy Lipids and lipid-like molecules > Steroids and steroid derivatives > Steroid lactones > Withanolides and derivatives
IUPAC Name (1S,2S,5S,6S,7R,9R,11S,12S,15R,16S)-6-hydroxy-2-(hydroxymethyl)-15-[(1S)-1-[(2R)-5-(hydroxymethyl)-4-methyl-6-oxo-2,3-dihydropyran-2-yl]ethyl]-5-methoxy-16-methyl-8-oxapentacyclo[9.7.0.02,7.07,9.012,16]octadecan-3-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C29H42O8/c1-14-9-21(36-26(34)17(14)12-30)15(2)18-5-6-19-16-10-24-29(37-24)25(33)22(35-4)11-23(32)28(29,13-31)20(16)7-8-27(18,19)3/h15-16,18-22,24-25,30-31,33H,5-13H2,1-4H3/t15-,16-,18+,19-,20-,21+,22-,24+,25-,27+,28-,29-/m0/s1
InChI Key XGLFAAWROSMYJO-QAYSIJLNSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C29H42O8
Molecular Weight 518.60 g/mol
Exact Mass 518.28796829 g/mol
Topological Polar Surface Area (TPSA) 126.00 Ų
XlogP 2.70
Atomic LogP (AlogP) 2.17
H-Bond Acceptor 8
H-Bond Donor 3
Rotatable Bonds 5

Synonyms

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CHEBI:69109
CHEMBL1934456
SCHEMBL11961320
DTXSID901109729
1350448-45-1
Q27137450
(3beta,4beta,5beta,6beta,22R)-4,19,27-trihydroxy-3-methoxy-5,6:22,26-diepoxyergost-24-ene-1,26-dione
Ergost-24-en-26-oic acid, 5,6-epoxy-4,19,22,27-tetrahydroxy-3-methoxy-1-oxo-, I -lactone, (3I(2),4I(2),5I(2),6I(2),22R)-

2D Structure

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2D Structure of Withalongolide D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8730 87.30%
Caco-2 - 0.7674 76.74%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability + 0.5571 55.71%
Subcellular localzation Mitochondria 0.7696 76.96%
OATP2B1 inhibitior - 0.5663 56.63%
OATP1B1 inhibitior + 0.8524 85.24%
OATP1B3 inhibitior + 0.9287 92.87%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.7021 70.21%
BSEP inhibitior + 0.8422 84.22%
P-glycoprotein inhibitior - 0.4366 43.66%
P-glycoprotein substrate + 0.5816 58.16%
CYP3A4 substrate + 0.7509 75.09%
CYP2C9 substrate - 0.8299 82.99%
CYP2D6 substrate - 0.8908 89.08%
CYP3A4 inhibition - 0.8800 88.00%
CYP2C9 inhibition - 0.8256 82.56%
CYP2C19 inhibition - 0.8757 87.57%
CYP2D6 inhibition - 0.9481 94.81%
CYP1A2 inhibition - 0.8346 83.46%
CYP2C8 inhibition + 0.5463 54.63%
CYP inhibitory promiscuity - 0.9264 92.64%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6284 62.84%
Eye corrosion - 0.9886 98.86%
Eye irritation - 0.9503 95.03%
Skin irritation - 0.6236 62.36%
Skin corrosion - 0.9395 93.95%
Ames mutagenesis - 0.5902 59.02%
Human Ether-a-go-go-Related Gene inhibition - 0.4395 43.95%
Micronuclear - 0.6900 69.00%
Hepatotoxicity - 0.5533 55.33%
skin sensitisation - 0.8995 89.95%
Respiratory toxicity + 0.8222 82.22%
Reproductive toxicity + 0.8889 88.89%
Mitochondrial toxicity + 0.7125 71.25%
Nephrotoxicity + 0.5816 58.16%
Acute Oral Toxicity (c) I 0.6987 69.87%
Estrogen receptor binding + 0.6514 65.14%
Androgen receptor binding + 0.7786 77.86%
Thyroid receptor binding - 0.5764 57.64%
Glucocorticoid receptor binding + 0.7197 71.97%
Aromatase binding + 0.7437 74.37%
PPAR gamma + 0.6296 62.96%
Honey bee toxicity - 0.6695 66.95%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.5100 51.00%
Fish aquatic toxicity + 0.9432 94.32%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL204 P00734 Thrombin 96.59% 96.01%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.18% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.76% 97.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 91.70% 91.11%
CHEMBL2581 P07339 Cathepsin D 91.09% 98.95%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 90.50% 99.23%
CHEMBL1937 Q92769 Histone deacetylase 2 90.48% 94.75%
CHEMBL2996 Q05655 Protein kinase C delta 87.97% 97.79%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 87.20% 97.14%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 87.19% 96.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.98% 95.56%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.88% 86.33%
CHEMBL5103 Q969S8 Histone deacetylase 10 86.60% 90.08%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 85.90% 95.89%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 84.44% 94.00%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 82.91% 92.62%
CHEMBL221 P23219 Cyclooxygenase-1 82.42% 90.17%
CHEMBL1994 P08235 Mineralocorticoid receptor 82.29% 100.00%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 82.22% 82.69%
CHEMBL3837 P07711 Cathepsin L 81.26% 96.61%
CHEMBL5028 O14672 ADAM10 81.07% 97.50%
CHEMBL5608 Q16288 NT-3 growth factor receptor 80.89% 95.89%
CHEMBL226 P30542 Adenosine A1 receptor 80.62% 95.93%
CHEMBL3820 P35557 Hexokinase type IV 80.32% 91.96%
CHEMBL299 P17252 Protein kinase C alpha 80.28% 98.03%
CHEMBL3401 O75469 Pregnane X receptor 80.05% 94.73%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Physalis longifolia

Cross-Links

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PubChem 56926115
NPASS NPC159456
ChEMBL CHEMBL1934456
LOTUS LTS0167498
wikiData Q27137450