Wakodecaline A

Details

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Internal ID c45ba58a-03de-4c38-b35a-6b02d9d54fb8
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Diterpenoids
IUPAC Name (2R)-2-[[(2S,3R,3aS,5aR,7S,9aS,9bR)-3-[(E,3S)-3-hydroxybut-1-enyl]-4,7,9b-trimethyl-1-oxo-3,3a,5a,6,7,8,9,9a-octahydro-2H-cyclopenta[a]naphthalene-2-carbonyl]-methylamino]-3-hydroxypropanoic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C25H37NO6/c1-13-6-9-18-16(10-13)11-14(2)21-17(8-7-15(3)28)20(22(29)25(18,21)4)23(30)26(5)19(12-27)24(31)32/h7-8,11,13,15-21,27-28H,6,9-10,12H2,1-5H3,(H,31,32)/b8-7+/t13-,15-,16+,17-,18-,19+,20-,21+,25+/m0/s1
InChI Key JDXAKDFLLVKKOO-UDDRCHRDSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C25H37NO6
Molecular Weight 447.60 g/mol
Exact Mass 447.26208790 g/mol
Topological Polar Surface Area (TPSA) 115.00 Ų
XlogP 2.10
Atomic LogP (AlogP) 2.28
H-Bond Acceptor 5
H-Bond Donor 3
Rotatable Bonds 6

Synonyms

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(2R)-2-[[(2S,3R,3aS,5aR,7S,9aS,9bR)-3-[(E,3S)-3-hydroxybut-1-enyl]-4,7,9b-trimethyl-1-oxo-3,3a,5a,6,7,8,9,9a-octahydro-2H-cyclopenta[a]naphthalene-2-carbonyl]-methylamino]-3-hydroxypropanoic acid
(2R)-2-(((2S,3R,3aS,5aR,7S,9aS,9bR)-3-((E,3S)-3-hydroxybut-1-enyl)-4,7,9b-trimethyl-1-oxo-3,3a,5a,6,7,8,9,9a-octahydro-2H-cyclopenta(a)naphthalene-2-carbonyl)-methylamino)-3-hydroxypropanoic acid
(2R)-2-(1-((2S,3R,3as,5ar,7S,9as,9BR)-3-((1E,3S)-3-hydroxybut-1-en-1-yl)-4,7,9b-trimethyl-1-oxo-1H,2H,3H,3ah,5ah,6H,7H,8H,9H,9ah,9BH-cyclopenta(a)naphthalen-2-yl)-N-methylformamido)-3-hydroxypropanoate
(2R)-2-{1-[(2S,3R,3as,5ar,7S,9as,9BR)-3-[(1E,3S)-3-hydroxybut-1-en-1-yl]-4,7,9b-trimethyl-1-oxo-1H,2H,3H,3ah,5ah,6H,7H,8H,9H,9ah,9BH-cyclopenta[a]naphthalen-2-yl]-N-methylformamido}-3-hydroxypropanoate
RefChem:194738
CHEBI:226587

2D Structure

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2D Structure of Wakodecaline A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9461 94.61%
Caco-2 - 0.6015 60.15%
Blood Brain Barrier - 0.5000 50.00%
Human oral bioavailability - 0.6857 68.57%
Subcellular localzation Mitochondria 0.7075 70.75%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8408 84.08%
OATP1B3 inhibitior + 0.9177 91.77%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.7602 76.02%
BSEP inhibitior - 0.4613 46.13%
P-glycoprotein inhibitior - 0.5645 56.45%
P-glycoprotein substrate + 0.5156 51.56%
CYP3A4 substrate + 0.7020 70.20%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8643 86.43%
CYP3A4 inhibition - 0.8899 88.99%
CYP2C9 inhibition - 0.7749 77.49%
CYP2C19 inhibition - 0.8252 82.52%
CYP2D6 inhibition - 0.8945 89.45%
CYP1A2 inhibition - 0.8013 80.13%
CYP2C8 inhibition - 0.6726 67.26%
CYP inhibitory promiscuity - 0.7023 70.23%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.5847 58.47%
Eye corrosion - 0.9877 98.77%
Eye irritation - 0.9771 97.71%
Skin irritation - 0.7389 73.89%
Skin corrosion - 0.9339 93.39%
Ames mutagenesis - 0.5307 53.07%
Human Ether-a-go-go-Related Gene inhibition - 0.6537 65.37%
Micronuclear + 0.6500 65.00%
Hepatotoxicity - 0.5990 59.90%
skin sensitisation - 0.8648 86.48%
Respiratory toxicity + 0.7333 73.33%
Reproductive toxicity + 0.8556 85.56%
Mitochondrial toxicity + 0.7875 78.75%
Nephrotoxicity - 0.8279 82.79%
Acute Oral Toxicity (c) III 0.6329 63.29%
Estrogen receptor binding + 0.6488 64.88%
Androgen receptor binding + 0.6569 65.69%
Thyroid receptor binding - 0.5680 56.80%
Glucocorticoid receptor binding + 0.6430 64.30%
Aromatase binding - 0.5000 50.00%
PPAR gamma + 0.6206 62.06%
Honey bee toxicity - 0.7718 77.18%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity - 0.6553 65.53%
Fish aquatic toxicity + 0.9652 96.52%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.49% 96.09%
CHEMBL2581 P07339 Cathepsin D 95.64% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.68% 95.56%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 88.96% 96.47%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 87.25% 91.11%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.00% 97.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.84% 86.33%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 83.14% 93.00%
CHEMBL4227 P25090 Lipoxin A4 receptor 82.36% 100.00%
CHEMBL4040 P28482 MAP kinase ERK2 82.17% 83.82%
CHEMBL3359 P21462 Formyl peptide receptor 1 81.71% 93.56%
CHEMBL221 P23219 Cyclooxygenase-1 80.93% 90.17%
CHEMBL5028 O14672 ADAM10 80.90% 97.50%
CHEMBL3492 P49721 Proteasome Macropain subunit 80.89% 90.24%
CHEMBL253 P34972 Cannabinoid CB2 receptor 80.77% 97.25%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.71% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 139589497
LOTUS LTS0160429
wikiData Q105125823