Vitisin B (vitis vinifera)

Details

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Internal ID 6ec0b627-8aa7-4fcf-9855-b0fb9edab181
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Flavonoid O-glycosides > Flavonoid-3-O-glycosides
IUPAC Name [3-(4-hydroxy-3,5-dimethoxyphenyl)-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2,8-dioxatricyclo[7.3.1.05,13]trideca-1(12),3,5(13),6,9-pentaen-11-ylidene]oxidanium
SMILES (Canonical) COC1=CC(=CC(=C1O)OC)C2=C(C3=C4C(=CC(=[OH+])C=C4O2)OC=C3)OC5C(C(C(C(O5)CO)O)O)O
SMILES (Isomeric) COC1=CC(=CC(=C1O)OC)C2=C(C3=C4C(=CC(=[OH+])C=C4O2)OC=C3)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O
InChI InChI=1S/C25H24O12/c1-32-15-5-10(6-16(33-2)19(15)28)23-24(37-25-22(31)21(30)20(29)17(9-26)36-25)12-3-4-34-13-7-11(27)8-14(35-23)18(12)13/h3-8,17,20-22,25-26,28-31H,9H2,1-2H3/p+1/t17-,20-,21+,22-,25+/m1/s1
InChI Key MQBZYHDAWXXFLB-FHBCLOHASA-O
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C25H25O12+
Molecular Weight 517.50 g/mol
Exact Mass 517.13460123 g/mol
Topological Polar Surface Area (TPSA) 158.00 Ų
XlogP -0.90
Atomic LogP (AlogP) 0.75
H-Bond Acceptor 11
H-Bond Donor 5
Rotatable Bonds 6

Synonyms

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C3JJ5TC7LJ
Malvidin-3-glucoside-4-vinyl
184362-10-5
Pyrano[4,3,2-de]-1-benzopyrylium, 3-(beta-D-glucopyranosyloxy)-8-hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-
8-Hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-3-(((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl)oxy)-1lambda4-pyrano(4,3,2-de)(1)benzopyran-1-ylium
8-Hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1lambda4-pyrano[4,3,2-de][1]benzopyran-1-ylium
Pyrano(4,3,2-de)-1-benzopyrylium, 3-(beta-D-glucopyranosyloxy)-8-hydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-
(+)-Vitisin B
UNII-C3JJ5TC7LJ
Pyranomalvidin 3-glucoside
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Vitisin B (vitis vinifera)

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7589 75.89%
Caco-2 - 0.8560 85.60%
Blood Brain Barrier - 0.8750 87.50%
Human oral bioavailability - 0.5571 55.71%
Subcellular localzation Mitochondria 0.4966 49.66%
OATP2B1 inhibitior - 0.7045 70.45%
OATP1B1 inhibitior + 0.8780 87.80%
OATP1B3 inhibitior + 0.9591 95.91%
MATE1 inhibitior - 0.8600 86.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior + 0.8178 81.78%
P-glycoprotein inhibitior - 0.4297 42.97%
P-glycoprotein substrate + 0.5000 50.00%
CYP3A4 substrate + 0.6228 62.28%
CYP2C9 substrate - 0.8115 81.15%
CYP2D6 substrate - 0.8238 82.38%
CYP3A4 inhibition - 0.9203 92.03%
CYP2C9 inhibition - 0.9252 92.52%
CYP2C19 inhibition - 0.9192 91.92%
CYP2D6 inhibition - 0.9353 93.53%
CYP1A2 inhibition - 0.8902 89.02%
CYP2C8 inhibition + 0.7941 79.41%
CYP inhibitory promiscuity - 0.7790 77.90%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.7113 71.13%
Eye corrosion - 0.9885 98.85%
Eye irritation - 0.9010 90.10%
Skin irritation - 0.8238 82.38%
Skin corrosion - 0.9565 95.65%
Ames mutagenesis + 0.5400 54.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3885 38.85%
Micronuclear + 0.6833 68.33%
Hepatotoxicity - 0.6500 65.00%
skin sensitisation - 0.9364 93.64%
Respiratory toxicity + 0.5889 58.89%
Reproductive toxicity + 0.7667 76.67%
Mitochondrial toxicity - 0.5625 56.25%
Nephrotoxicity - 0.9323 93.23%
Acute Oral Toxicity (c) III 0.6678 66.78%
Estrogen receptor binding + 0.7668 76.68%
Androgen receptor binding + 0.7079 70.79%
Thyroid receptor binding + 0.5169 51.69%
Glucocorticoid receptor binding + 0.7879 78.79%
Aromatase binding + 0.5614 56.14%
PPAR gamma + 0.7064 70.64%
Honey bee toxicity - 0.7746 77.46%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.6049 60.49%
Fish aquatic toxicity + 0.7543 75.43%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.31% 91.11%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 97.25% 85.14%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 95.82% 94.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 95.56% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.40% 96.09%
CHEMBL4306 P22460 Voltage-gated potassium channel subunit Kv1.5 94.64% 94.03%
CHEMBL3060 Q9Y345 Glycine transporter 2 92.37% 99.17%
CHEMBL2581 P07339 Cathepsin D 91.62% 98.95%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 88.97% 96.00%
CHEMBL220 P22303 Acetylcholinesterase 87.58% 94.45%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 86.50% 89.62%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 84.00% 94.45%
CHEMBL1293249 Q13887 Kruppel-like factor 5 83.98% 86.33%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 83.93% 92.62%
CHEMBL5608 Q16288 NT-3 growth factor receptor 83.90% 95.89%
CHEMBL5747 Q92793 CREB-binding protein 83.82% 95.12%
CHEMBL3714130 P46095 G-protein coupled receptor 6 82.93% 97.36%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 81.46% 95.56%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 81.41% 95.83%
CHEMBL3401 O75469 Pregnane X receptor 80.85% 94.73%
CHEMBL241 Q14432 Phosphodiesterase 3A 80.38% 92.94%

Cross-Links

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PubChem 44195285
NPASS NPC212387