Vernolide A

Details

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Internal ID 6f93b5dd-caf9-4dd2-ac2a-46c65e5deabb
Taxonomy Lipids and lipid-like molecules > Fatty Acyls > Fatty acid esters
IUPAC Name [(1R,2E,8S,10R,11S)-6-(hydroxymethyl)-11-methoxy-1,10-dimethyl-5-oxo-4,14-dioxatricyclo[9.2.1.03,7]tetradeca-2,6-dien-8-yl] (E)-2-methylbut-2-enoate
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C21H28O7/c1-6-12(2)18(23)26-15-9-13(3)21(25-5)8-7-20(4,28-21)10-16-17(15)14(11-22)19(24)27-16/h6,10,13,15,22H,7-9,11H2,1-5H3/b12-6+,16-10+/t13-,15+,20-,21+/m1/s1
InChI Key KZMMOGWSMBTTFY-GDFGMOSZSA-N
Popularity 14 references in papers

Physical and Chemical Properties

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Molecular Formula C21H28O7
Molecular Weight 392.40 g/mol
Exact Mass 392.18350323 g/mol
Topological Polar Surface Area (TPSA) 91.30 Ų
XlogP 2.10
Atomic LogP (AlogP) 2.55
H-Bond Acceptor 7
H-Bond Donor 1
Rotatable Bonds 4

Synonyms

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Vernolide A
RefChem:194004
((1R,2E,8S,10R,11S)-6-(hydroxymethyl)-11-methoxy-1,10-dimethyl-5-oxo-4,14-dioxatricyclo(9.2.1.03,7)tetradeca-2,6-dien-8-yl) (E)-2-methylbut-2-enoate
618860-56-3
CHEMBL2062870

2D Structure

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2D Structure of Vernolide A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9820 98.20%
Caco-2 + 0.7752 77.52%
Blood Brain Barrier + 0.8500 85.00%
Human oral bioavailability - 0.5714 57.14%
Subcellular localzation Mitochondria 0.7871 78.71%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8469 84.69%
OATP1B3 inhibitior + 0.9476 94.76%
MATE1 inhibitior - 0.7612 76.12%
OCT2 inhibitior - 0.5521 55.21%
BSEP inhibitior + 0.8714 87.14%
P-glycoprotein inhibitior + 0.7173 71.73%
P-glycoprotein substrate - 0.5705 57.05%
CYP3A4 substrate + 0.6723 67.23%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8834 88.34%
CYP3A4 inhibition - 0.5762 57.62%
CYP2C9 inhibition - 0.8509 85.09%
CYP2C19 inhibition - 0.9354 93.54%
CYP2D6 inhibition - 0.9569 95.69%
CYP1A2 inhibition - 0.6935 69.35%
CYP2C8 inhibition - 0.5734 57.34%
CYP inhibitory promiscuity - 0.9528 95.28%
UGT catelyzed - 0.6638 66.38%
Carcinogenicity (binary) - 0.9000 90.00%
Carcinogenicity (trinary) Danger 0.4356 43.56%
Eye corrosion - 0.9832 98.32%
Eye irritation - 0.9179 91.79%
Skin irritation - 0.5505 55.05%
Skin corrosion - 0.9386 93.86%
Ames mutagenesis - 0.5108 51.08%
Human Ether-a-go-go-Related Gene inhibition + 0.7517 75.17%
Micronuclear - 0.7700 77.00%
Hepatotoxicity + 0.6019 60.19%
skin sensitisation - 0.8937 89.37%
Respiratory toxicity + 0.8111 81.11%
Reproductive toxicity + 0.6333 63.33%
Mitochondrial toxicity + 0.5125 51.25%
Nephrotoxicity + 0.6169 61.69%
Acute Oral Toxicity (c) III 0.5147 51.47%
Estrogen receptor binding + 0.7022 70.22%
Androgen receptor binding + 0.6468 64.68%
Thyroid receptor binding + 0.6992 69.92%
Glucocorticoid receptor binding + 0.8707 87.07%
Aromatase binding + 0.6751 67.51%
PPAR gamma + 0.8202 82.02%
Honey bee toxicity - 0.7243 72.43%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.6200 62.00%
Fish aquatic toxicity + 0.9283 92.83%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.88% 91.11%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 96.50% 82.69%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.37% 96.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 91.89% 97.25%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 91.68% 94.45%
CHEMBL2581 P07339 Cathepsin D 91.21% 98.95%
CHEMBL1293249 Q13887 Kruppel-like factor 5 89.96% 86.33%
CHEMBL4224 P49759 Dual specificty protein kinase CLK1 87.02% 85.30%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 86.83% 99.23%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.37% 97.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.20% 95.56%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.30% 89.00%
CHEMBL2007 P16234 Platelet-derived growth factor receptor alpha 83.01% 91.07%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 82.21% 97.14%
CHEMBL5028 O14672 ADAM10 81.61% 97.50%
CHEMBL340 P08684 Cytochrome P450 3A4 81.13% 91.19%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 81.07% 91.24%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.13% 99.17%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Cyanthillium cinereum

Cross-Links

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PubChem 70690655
NPASS NPC470521
ChEMBL CHEMBL2062870
LOTUS LTS0026472
wikiData Q105148333