Vernolide

Details

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Internal ID 620fe3d5-5774-4520-af25-f291263e1345
Taxonomy Organoheterocyclic compounds > Lactones > Gamma butyrolactones
IUPAC Name [(1R,3S,4R,8R,9Z,13R,15R)-15-hydroxy-5-methylidene-6-oxo-7,14,16-trioxatetracyclo[8.4.3.01,13.04,8]heptadec-9-en-3-yl] 2-methylprop-2-enoate
SMILES (Canonical) CC(=C)C(=O)OC1CC23C(O2)CCC(=CC4C1C(=C)C(=O)O4)COC3O
SMILES (Isomeric) CC(=C)C(=O)O[C@H]1C[C@]23[C@H](O2)CC/C(=C/[C@@H]4[C@@H]1C(=C)C(=O)O4)/CO[C@H]3O
InChI InChI=1S/C19H22O7/c1-9(2)16(20)25-13-7-19-14(26-19)5-4-11(8-23-18(19)22)6-12-15(13)10(3)17(21)24-12/h6,12-15,18,22H,1,3-5,7-8H2,2H3/b11-6-/t12-,13+,14-,15+,18-,19-/m1/s1
InChI Key ZGXVZQZFVYSUDU-ULYHCOEVSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C19H22O7
Molecular Weight 362.40 g/mol
Exact Mass 362.13655304 g/mol
Topological Polar Surface Area (TPSA) 94.60 Ų
XlogP 0.90
Atomic LogP (AlogP) 1.17
H-Bond Acceptor 7
H-Bond Donor 1
Rotatable Bonds 2

Synonyms

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27428-86-0
C09583
CHEBI:9965
Q27108537

2D Structure

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2D Structure of Vernolide

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9701 97.01%
Caco-2 - 0.6639 66.39%
Blood Brain Barrier + 0.6750 67.50%
Human oral bioavailability - 0.6429 64.29%
Subcellular localzation Mitochondria 0.8762 87.62%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9116 91.16%
OATP1B3 inhibitior + 0.9484 94.84%
MATE1 inhibitior - 0.8200 82.00%
OCT2 inhibitior - 0.5021 50.21%
BSEP inhibitior - 0.6721 67.21%
P-glycoprotein inhibitior - 0.7161 71.61%
P-glycoprotein substrate - 0.5448 54.48%
CYP3A4 substrate + 0.6803 68.03%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8577 85.77%
CYP3A4 inhibition - 0.9473 94.73%
CYP2C9 inhibition - 0.7990 79.90%
CYP2C19 inhibition - 0.8617 86.17%
CYP2D6 inhibition - 0.9232 92.32%
CYP1A2 inhibition - 0.6594 65.94%
CYP2C8 inhibition + 0.4603 46.03%
CYP inhibitory promiscuity - 0.9531 95.31%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.9243 92.43%
Carcinogenicity (trinary) Non-required 0.4884 48.84%
Eye corrosion - 0.9616 96.16%
Eye irritation - 0.9134 91.34%
Skin irritation - 0.6671 66.71%
Skin corrosion - 0.9108 91.08%
Ames mutagenesis + 0.5300 53.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4270 42.70%
Micronuclear - 0.7000 70.00%
Hepatotoxicity + 0.6479 64.79%
skin sensitisation - 0.8017 80.17%
Respiratory toxicity + 0.7111 71.11%
Reproductive toxicity + 0.6778 67.78%
Mitochondrial toxicity + 0.5125 51.25%
Nephrotoxicity + 0.6455 64.55%
Acute Oral Toxicity (c) III 0.4587 45.87%
Estrogen receptor binding + 0.8378 83.78%
Androgen receptor binding + 0.5933 59.33%
Thyroid receptor binding - 0.5254 52.54%
Glucocorticoid receptor binding + 0.7545 75.45%
Aromatase binding + 0.5914 59.14%
PPAR gamma + 0.6520 65.20%
Honey bee toxicity - 0.6926 69.26%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.6100 61.00%
Fish aquatic toxicity + 0.9459 94.59%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.33% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 92.56% 94.45%
CHEMBL1806 P11388 DNA topoisomerase II alpha 89.26% 89.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 88.50% 99.23%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 86.88% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.45% 95.56%
CHEMBL221 P23219 Cyclooxygenase-1 86.08% 90.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 85.40% 97.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 85.11% 100.00%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 84.62% 97.33%
CHEMBL1951 P21397 Monoamine oxidase A 83.44% 91.49%
CHEMBL241 Q14432 Phosphodiesterase 3A 83.39% 92.94%
CHEMBL2581 P07339 Cathepsin D 83.05% 98.95%
CHEMBL340 P08684 Cytochrome P450 3A4 81.89% 91.19%
CHEMBL4040 P28482 MAP kinase ERK2 81.05% 83.82%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Gymnanthemum amygdalinum
Vernonia colorata

Cross-Links

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PubChem 5281508
LOTUS LTS0024255
wikiData Q27108537