Verapamil

Details

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Internal ID c8b7bf63-5f55-4479-854d-f11c091073d8
Taxonomy Benzenoids > Benzene and substituted derivatives > Phenylbutylamines
IUPAC Name 2-(3,4-dimethoxyphenyl)-5-[2-(3,4-dimethoxyphenyl)ethyl-methylamino]-2-propan-2-ylpentanenitrile
SMILES (Canonical) CC(C)C(CCCN(C)CCC1=CC(=C(C=C1)OC)OC)(C#N)C2=CC(=C(C=C2)OC)OC
SMILES (Isomeric) CC(C)C(CCCN(C)CCC1=CC(=C(C=C1)OC)OC)(C#N)C2=CC(=C(C=C2)OC)OC
InChI InChI=1S/C27H38N2O4/c1-20(2)27(19-28,22-10-12-24(31-5)26(18-22)33-7)14-8-15-29(3)16-13-21-9-11-23(30-4)25(17-21)32-6/h9-12,17-18,20H,8,13-16H2,1-7H3
InChI Key SGTNSNPWRIOYBX-UHFFFAOYSA-N
Popularity 21,458 references in papers

Physical and Chemical Properties

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Molecular Formula C27H38N2O4
Molecular Weight 454.60 g/mol
Exact Mass 454.28315770 g/mol
Topological Polar Surface Area (TPSA) 64.00 Ų
XlogP 3.80
Atomic LogP (AlogP) 5.09
H-Bond Acceptor 6
H-Bond Donor 0
Rotatable Bonds 13

Synonyms

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52-53-9
Iproveratril
Dilacoran
Vasolan
Isoptimo
Isoptin
Verapamilo
Verapamilum
Falicard
Finoptin
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Verapamil

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9735 97.35%
Caco-2 + 0.5463 54.63%
Blood Brain Barrier - 0.7500 75.00%
Human oral bioavailability + 0.6143 61.43%
Subcellular localzation Mitochondria 0.5532 55.32%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior - 0.7532 75.32%
OATP1B3 inhibitior + 0.9430 94.30%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior + 0.6500 65.00%
BSEP inhibitior + 0.9390 93.90%
P-glycoprotein inhibitior + 0.9674 96.74%
P-glycoprotein substrate + 0.9291 92.91%
CYP3A4 substrate + 0.7963 79.63%
CYP2C9 substrate - 0.5000 50.00%
CYP2D6 substrate + 0.6427 64.27%
CYP3A4 inhibition + 0.7960 79.60%
CYP2C9 inhibition - 0.9071 90.71%
CYP2C19 inhibition - 0.9026 90.26%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.9553 95.53%
CYP2C8 inhibition + 0.6246 62.46%
CYP inhibitory promiscuity - 0.9181 91.81%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.7623 76.23%
Carcinogenicity (trinary) Non-required 0.6565 65.65%
Eye corrosion - 0.9886 98.86%
Eye irritation - 0.9582 95.82%
Skin irritation - 0.7995 79.95%
Skin corrosion - 0.9399 93.99%
Ames mutagenesis - 0.7100 71.00%
Human Ether-a-go-go-Related Gene inhibition + 0.9552 95.52%
Micronuclear - 0.6800 68.00%
Hepatotoxicity + 0.7500 75.00%
skin sensitisation - 0.8775 87.75%
Respiratory toxicity + 0.9000 90.00%
Reproductive toxicity + 0.6111 61.11%
Mitochondrial toxicity + 0.9125 91.25%
Nephrotoxicity - 0.8450 84.50%
Acute Oral Toxicity (c) II 0.7343 73.43%
Estrogen receptor binding + 0.7477 74.77%
Androgen receptor binding + 0.8697 86.97%
Thyroid receptor binding + 0.7590 75.90%
Glucocorticoid receptor binding - 0.8183 81.83%
Aromatase binding + 0.7197 71.97%
PPAR gamma - 0.5000 50.00%
Honey bee toxicity - 0.6206 62.06%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity + 0.6400 64.00%
Fish aquatic toxicity + 0.9798 97.98%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
CHEMBL1867 P08913 Alpha-2a adrenergic receptor 579 nM
IC50
via CMAUP
CHEMBL5393 Q9UNQ0 ATP-binding cassette sub-family G member 2 524807.46 nM
IC50
PMID: 18678495
CHEMBL3622 P33261 Cytochrome P450 2C19 21800 nM
IC50
PMID: 23033255
CHEMBL3721 P10632 Cytochrome P450 2C8 17500 nM
Ki
PMID: 16248836
CHEMBL289 P10635 Cytochrome P450 2D6 43300 nM
IC50
PMID: 23033255
CHEMBL3491 P51589 Cytochrome P450 2J2 22000 nM
IC50
PMID: 23033255
CHEMBL340 P08684 Cytochrome P450 3A4 12000 nM
17600 nM
4700 nM
IC50
IC50
IC50
PMID: 23033255
PMID: 22328583
PMID: 12699389
CHEMBL234 P35462 Dopamine D3 receptor 186 nM
IC50
via CMAUP
CHEMBL240 Q12809 HERG 143 nM
143 nM
143 nM
141.25 nM
144.54 nM
10 nM
141.25 nM
141.25 nM
144.54 nM
141.25 nM
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
PMID: 12729675
PMID: 12190308
PMID: 21300721
PMID: 21185626
PMID: 19110341
via Super-PRED
PMID: 12873512
PMID: 18448342
PMID: 15745831
PMID: 15911273
CHEMBL1941 P25021 Histamine H2 receptor 2590 nM
IC50
via CMAUP
CHEMBL3004 P33527 Multidrug resistance-associated protein 1 3500 nM
6800 nM
113 nM
35 nM
9660 nM
IC50
IC50
Kd
Kd
IC50
PMID: 25093931
PMID: 22112208
via Super-PRED
via Super-PRED
PMID: 18707884
CHEMBL4302 P08183 P-glycoprotein 1 1600 nM
3100 nM
29 nM
740 nM
38 nM
1700 nM
12000 nM
6300 nM
4570.88 nM
5800 nM
4570.88 nM
6606.93 nM
4570.88 nM
6606.93 nM
8440 nM
400 nM
6300 nM
5754.4 nM
400 nM
4780 nM
2210 nM
2110 nM
1480 nM
6500 nM
4700 nM
4200 nM
5420 nM
2100 nM
4200 nM
575.44 nM
500 nM
9800 nM
14000 nM
5200 nM
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
IC50
PMID: 23245571
PMID: 10386932
PMID: 25282263
PMID: 25282263
PMID: 25985195
DOI: 10.1039/C2MD20286G
DOI: 10.1039/C2MD20286G
PMID: 12699389
PMID: 18678495
PMID: 18083034
PMID: 18083034
PMID: 18083034
PMID: 17890094
PMID: 17890094
PMID: 15359574
PMID: 15240100
PMID: 12699389
PMID: 18083034
PMID: 12699389
PMID: 12569305
PMID: 12569305
PMID: 12477351
PMID: 12477351
PMID: 11716514
PMID: 11716514
PMID: 11716514
PMID: 18707884
PMID: 10820137
PMID: 11454724
PMID: 22452412
PMID: 22112208
PMID: 21354800
PMID: 19402665
PMID: 19250834
CHEMBL224 P28223 Serotonin 2a (5-HT2a) receptor 442 nM
IC50
via CMAUP
CHEMBL1833 P41595 Serotonin 2b (5-HT2b) receptor 165 nM
IC50
via CMAUP
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 297 nM
IC50
via CMAUP
CHEMBL228 P31645 Serotonin transporter 240 nM
IC50
via CMAUP
CHEMBL1980 Q14524 Sodium channel protein type V alpha subunit 41500 nM
IC50
PMID: 21300721
CHEMBL5685 O15245 Solute carrier family 22 member 1 6800 nM
IC50
PMID: 18788725
CHEMBL1697668 Q9Y6L6 Solute carrier organic anion transporter family member 1B1 32000 nM
64000 nM
IC50
IC50
PMID: 22587986
PMID: 22587986
CHEMBL1940 Q13936 Voltage-gated L-type calcium channel alpha-1C subunit 50000 nM
150 nM
23500 nM
24000 nM
47000 nM
IC50
IC50
IC50
IC50
IC50
PMID: 22761000
PMID: 8474099
PMID: 22761000
PMID: 22761000
PMID: 22761000
CHEMBL4633 P22001 Voltage-gated potassium channel subunit Kv1.3 8000 nM
IC50
PMID: 23084278

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.63% 96.09%
CHEMBL2581 P07339 Cathepsin D 98.29% 98.95%
CHEMBL2179 P04062 Beta-glucocerebrosidase 96.11% 85.31%
CHEMBL3060 Q9Y345 Glycine transporter 2 95.22% 99.17%
CHEMBL2535 P11166 Glucose transporter 93.86% 98.75%
CHEMBL1293249 Q13887 Kruppel-like factor 5 93.29% 86.33%
CHEMBL215 P09917 Arachidonate 5-lipoxygenase 88.93% 92.68%
CHEMBL4581 P52732 Kinesin-like protein 1 88.85% 93.18%
CHEMBL2815 P04629 Nerve growth factor receptor Trk-A 88.80% 87.16%
CHEMBL1255126 O15151 Protein Mdm4 88.79% 90.20%
CHEMBL3837 P07711 Cathepsin L 88.51% 96.61%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 88.25% 95.89%
CHEMBL5608 Q16288 NT-3 growth factor receptor 88.20% 95.89%
CHEMBL5409 Q8TDU6 G-protein coupled bile acid receptor 1 86.07% 93.65%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 85.76% 96.00%
CHEMBL1907 P15144 Aminopeptidase N 84.79% 93.31%
CHEMBL1744525 P43490 Nicotinamide phosphoribosyltransferase 83.64% 96.25%
CHEMBL3192 Q9BY41 Histone deacetylase 8 83.52% 93.99%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 83.49% 89.62%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 83.34% 90.71%
CHEMBL5747 Q92793 CREB-binding protein 82.63% 95.12%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 81.42% 100.00%
CHEMBL4247 Q9UM73 ALK tyrosine kinase receptor 81.03% 96.86%
CHEMBL249 P25103 Neurokinin 1 receptor 80.58% 99.17%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 80.49% 91.11%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Piper nigrum

Cross-Links

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PubChem 2520
NPASS NPC42793
ChEMBL CHEMBL6966