Variecolorin C

Details

Top
Internal ID 3727242f-e7e2-4dfe-916f-0667aaddca19
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Alpha amino acids and derivatives
IUPAC Name (3Z,6S)-3-[[5-[(2R)-2-hydroxy-3-methylbut-3-enyl]-2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methylidene]-6-methylpiperazine-2,5-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C24H29N3O3/c1-7-24(5,6)21-17(12-19-23(30)25-14(4)22(29)27-19)16-10-15(8-9-18(16)26-21)11-20(28)13(2)3/h7-10,12,14,20,26,28H,1-2,11H2,3-6H3,(H,25,30)(H,27,29)/b19-12-/t14-,20+/m0/s1
InChI Key SEQDZBXCPJTKIR-GTUZUVEESA-N
Popularity 3 references in papers

Physical and Chemical Properties

Top
Molecular Formula C24H29N3O3
Molecular Weight 407.50 g/mol
Exact Mass 407.22089180 g/mol
Topological Polar Surface Area (TPSA) 94.20 Ų
XlogP 4.20
Atomic LogP (AlogP) 3.09
H-Bond Acceptor 3
H-Bond Donor 4
Rotatable Bonds 6

Synonyms

Top
CHEMBL250874
(3Z,6S)-3-[[5-[(2R)-2-hydroxy-3-methylbut-3-enyl]-2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methylidene]-6-methylpiperazine-2,5-dione

2D Structure

Top
2D Structure of Variecolorin C

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9875 98.75%
Caco-2 - 0.7486 74.86%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability - 0.5286 52.86%
Subcellular localzation Mitochondria 0.6934 69.34%
OATP2B1 inhibitior - 0.7127 71.27%
OATP1B1 inhibitior + 0.8408 84.08%
OATP1B3 inhibitior + 0.9334 93.34%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior + 0.9578 95.78%
P-glycoprotein inhibitior - 0.5121 51.21%
P-glycoprotein substrate + 0.6741 67.41%
CYP3A4 substrate + 0.6462 64.62%
CYP2C9 substrate - 0.8116 81.16%
CYP2D6 substrate - 0.8489 84.89%
CYP3A4 inhibition - 0.5716 57.16%
CYP2C9 inhibition + 0.5641 56.41%
CYP2C19 inhibition - 0.5540 55.40%
CYP2D6 inhibition - 0.8291 82.91%
CYP1A2 inhibition - 0.5242 52.42%
CYP2C8 inhibition + 0.5860 58.60%
CYP inhibitory promiscuity + 0.7225 72.25%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.8500 85.00%
Carcinogenicity (trinary) Non-required 0.5734 57.34%
Eye corrosion - 0.9890 98.90%
Eye irritation - 0.9672 96.72%
Skin irritation - 0.7880 78.80%
Skin corrosion - 0.9313 93.13%
Ames mutagenesis - 0.5500 55.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4365 43.65%
Micronuclear + 0.7700 77.00%
Hepatotoxicity + 0.5587 55.87%
skin sensitisation - 0.8283 82.83%
Respiratory toxicity + 0.7111 71.11%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.8125 81.25%
Nephrotoxicity - 0.8341 83.41%
Acute Oral Toxicity (c) III 0.5149 51.49%
Estrogen receptor binding + 0.7281 72.81%
Androgen receptor binding + 0.6855 68.55%
Thyroid receptor binding + 0.7270 72.70%
Glucocorticoid receptor binding + 0.6470 64.70%
Aromatase binding + 0.5447 54.47%
PPAR gamma + 0.8353 83.53%
Honey bee toxicity - 0.7035 70.35%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.5400 54.00%
Fish aquatic toxicity + 0.9076 90.76%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 99.01% 97.25%
CHEMBL2581 P07339 Cathepsin D 98.76% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.60% 91.11%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 96.28% 85.14%
CHEMBL1951 P21397 Monoamine oxidase A 95.70% 91.49%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.30% 96.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.79% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.30% 95.56%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 90.29% 92.88%
CHEMBL5103 Q969S8 Histone deacetylase 10 89.80% 90.08%
CHEMBL1806 P11388 DNA topoisomerase II alpha 87.85% 89.00%
CHEMBL3524 P56524 Histone deacetylase 4 87.50% 92.97%
CHEMBL1937 Q92769 Histone deacetylase 2 86.88% 94.75%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 85.36% 96.90%
CHEMBL2179 P04062 Beta-glucocerebrosidase 83.96% 85.31%
CHEMBL1902 P62942 FK506-binding protein 1A 83.15% 97.05%
CHEMBL255 P29275 Adenosine A2b receptor 83.07% 98.59%
CHEMBL3230 O95977 Sphingosine 1-phosphate receptor Edg-6 82.30% 94.01%
CHEMBL3310 Q96DB2 Histone deacetylase 11 82.14% 88.56%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 81.96% 91.71%
CHEMBL241 Q14432 Phosphodiesterase 3A 81.69% 92.94%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 80.61% 93.03%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 23634522
LOTUS LTS0193099
wikiData Q75065021