Variecolorin B

Details

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Internal ID cd561164-5df7-450c-8caf-08f662af042b
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Alpha amino acids and derivatives
IUPAC Name (3Z,6S)-3-[[5-[(2R)-2-chloro-3-hydroxy-3-methylbutyl]-2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methylidene]-6-methylpiperazine-2,5-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C24H30ClN3O3/c1-7-23(3,4)20-16(12-18-22(30)26-13(2)21(29)28-18)15-10-14(8-9-17(15)27-20)11-19(25)24(5,6)31/h7-10,12-13,19,27,31H,1,11H2,2-6H3,(H,26,30)(H,28,29)/b18-12-/t13-,19+/m0/s1
InChI Key VIKMWNKSZYUXNW-RKFKHAPCSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C24H30ClN3O3
Molecular Weight 444.00 g/mol
Exact Mass 443.1975695 g/mol
Topological Polar Surface Area (TPSA) 94.20 Ų
XlogP 4.20
Atomic LogP (AlogP) 3.53
H-Bond Acceptor 3
H-Bond Donor 4
Rotatable Bonds 6

Synonyms

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(3Z,6S)-3-[[5-[(2R)-2-chloro-3-hydroxy-3-methylbutyl]-2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methylidene]-6-methylpiperazine-2,5-dione
(3Z,6S)-3-((5-((2R)-2-chloro-3-hydroxy-3-methylbutyl)-2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl)methylidene)-6-methylpiperazine-2,5-dione
RefChem:193743
957780-66-4
CHEMBL250873
CHEBI:204089

2D Structure

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2D Structure of Variecolorin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9931 99.31%
Caco-2 - 0.7852 78.52%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability + 0.5714 57.14%
Subcellular localzation Mitochondria 0.7615 76.15%
OATP2B1 inhibitior - 0.8551 85.51%
OATP1B1 inhibitior + 0.8336 83.36%
OATP1B3 inhibitior + 0.9319 93.19%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior + 0.9541 95.41%
P-glycoprotein inhibitior - 0.4559 45.59%
P-glycoprotein substrate + 0.6080 60.80%
CYP3A4 substrate + 0.6452 64.52%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8696 86.96%
CYP3A4 inhibition + 0.5696 56.96%
CYP2C9 inhibition + 0.5381 53.81%
CYP2C19 inhibition + 0.5372 53.72%
CYP2D6 inhibition - 0.8411 84.11%
CYP1A2 inhibition - 0.5166 51.66%
CYP2C8 inhibition + 0.6137 61.37%
CYP inhibitory promiscuity + 0.8119 81.19%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.7059 70.59%
Carcinogenicity (trinary) Non-required 0.5825 58.25%
Eye corrosion - 0.9876 98.76%
Eye irritation - 0.9620 96.20%
Skin irritation - 0.7807 78.07%
Skin corrosion - 0.9239 92.39%
Ames mutagenesis + 0.5300 53.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7864 78.64%
Micronuclear + 0.7600 76.00%
Hepatotoxicity + 0.5962 59.62%
skin sensitisation - 0.8399 83.99%
Respiratory toxicity + 0.7444 74.44%
Reproductive toxicity + 0.7556 75.56%
Mitochondrial toxicity + 0.7875 78.75%
Nephrotoxicity - 0.8135 81.35%
Acute Oral Toxicity (c) III 0.5188 51.88%
Estrogen receptor binding + 0.7656 76.56%
Androgen receptor binding + 0.7357 73.57%
Thyroid receptor binding + 0.7367 73.67%
Glucocorticoid receptor binding + 0.6833 68.33%
Aromatase binding + 0.6297 62.97%
PPAR gamma + 0.8778 87.78%
Honey bee toxicity - 0.6871 68.71%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity + 0.5747 57.47%
Fish aquatic toxicity + 0.9798 97.98%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL253 P34972 Cannabinoid CB2 receptor 98.91% 97.25%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.42% 91.11%
CHEMBL2581 P07339 Cathepsin D 97.35% 98.95%
CHEMBL1951 P21397 Monoamine oxidase A 96.55% 91.49%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 96.22% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.95% 95.56%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 94.18% 92.88%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.90% 96.09%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 89.06% 89.34%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 87.09% 96.90%
CHEMBL5103 Q969S8 Histone deacetylase 10 86.44% 90.08%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 85.45% 91.71%
CHEMBL1806 P11388 DNA topoisomerase II alpha 84.87% 89.00%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 81.76% 93.00%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 80.98% 83.57%
CHEMBL3976 Q9UHL4 Dipeptidyl peptidase II 80.76% 92.29%
CHEMBL3492 P49721 Proteasome Macropain subunit 80.55% 90.24%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 80.37% 93.03%
CHEMBL3401 O75469 Pregnane X receptor 80.37% 94.73%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 23655533
LOTUS LTS0208583
wikiData Q77383659