Varamine B

Details

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Internal ID 96b9123b-fff5-4ad3-97c4-c7e305a0554a
Taxonomy Organoheterocyclic compounds > Quinolines and derivatives > Benzoquinolines > Pyridoacridines > Pyrido[2,3,4-kl]acridines
IUPAC Name N-[2-(12-methoxy-11-methylsulfanyl-8,14-diazatetracyclo[7.7.1.02,7.013,17]heptadeca-1(17),2,4,6,9,11,13,15-octaen-10-yl)ethyl]acetamide
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C21H21N3O2S/c1-12(25)22-10-9-15-18-17-14(13-6-4-5-7-16(13)24-18)8-11-23-19(17)20(26-2)21(15)27-3/h4-8,11,24H,9-10H2,1-3H3,(H,22,25)
InChI Key ZXFLZRXTBNTTBT-UHFFFAOYSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C21H21N3O2S
Molecular Weight 379.50 g/mol
Exact Mass 379.13544809 g/mol
Topological Polar Surface Area (TPSA) 88.60 Ų
XlogP 3.50
Atomic LogP (AlogP) 4.28
H-Bond Acceptor 4
H-Bond Donor 2
Rotatable Bonds 5

Synonyms

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122093-16-7
DTXSID80924078
Acetamide, N-(2-(4-methoxy-5-(methylthio)-7H-pyrido(2,3,4-kl)acridin-6-yl)ethyl)-
N-{2-[4-Methoxy-5-(methylsulfanyl)-7H-pyrido[2,3,4-kl]acridin-6-yl]ethyl}ethanimidic acid

2D Structure

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2D Structure of Varamine B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9755 97.55%
Caco-2 + 0.5000 50.00%
Blood Brain Barrier + 0.6250 62.50%
Human oral bioavailability - 0.5571 55.71%
Subcellular localzation Mitochondria 0.7081 70.81%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8834 88.34%
OATP1B3 inhibitior + 0.9415 94.15%
MATE1 inhibitior - 0.9209 92.09%
OCT2 inhibitior - 0.5000 50.00%
BSEP inhibitior + 0.8794 87.94%
P-glycoprotein inhibitior + 0.7463 74.63%
P-glycoprotein substrate + 0.7289 72.89%
CYP3A4 substrate + 0.6538 65.38%
CYP2C9 substrate - 0.6039 60.39%
CYP2D6 substrate - 0.8141 81.41%
CYP3A4 inhibition + 0.6662 66.62%
CYP2C9 inhibition + 0.5057 50.57%
CYP2C19 inhibition + 0.7726 77.26%
CYP2D6 inhibition - 0.5969 59.69%
CYP1A2 inhibition + 0.7196 71.96%
CYP2C8 inhibition + 0.7959 79.59%
CYP inhibitory promiscuity + 0.7852 78.52%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.6312 63.12%
Eye corrosion - 0.9885 98.85%
Eye irritation - 0.9817 98.17%
Skin irritation - 0.7731 77.31%
Skin corrosion - 0.9303 93.03%
Ames mutagenesis + 0.7300 73.00%
Human Ether-a-go-go-Related Gene inhibition + 0.8859 88.59%
Micronuclear + 0.7000 70.00%
Hepatotoxicity - 0.6000 60.00%
skin sensitisation - 0.8714 87.14%
Respiratory toxicity + 0.7556 75.56%
Reproductive toxicity + 0.8667 86.67%
Mitochondrial toxicity + 0.7875 78.75%
Nephrotoxicity - 0.8285 82.85%
Acute Oral Toxicity (c) III 0.6234 62.34%
Estrogen receptor binding + 0.7669 76.69%
Androgen receptor binding + 0.8214 82.14%
Thyroid receptor binding + 0.7827 78.27%
Glucocorticoid receptor binding + 0.8088 80.88%
Aromatase binding - 0.6102 61.02%
PPAR gamma + 0.8456 84.56%
Honey bee toxicity - 0.8064 80.64%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.5300 53.00%
Fish aquatic toxicity - 0.5544 55.44%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL240 Q12809 HERG 99.71% 89.76%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.77% 91.11%
CHEMBL255 P29275 Adenosine A2b receptor 98.58% 98.59%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 98.49% 85.14%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.83% 96.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 95.26% 89.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.58% 94.45%
CHEMBL2581 P07339 Cathepsin D 93.98% 98.95%
CHEMBL2535 P11166 Glucose transporter 93.57% 98.75%
CHEMBL1914 P06276 Butyrylcholinesterase 92.41% 95.00%
CHEMBL2095226 P05556 Integrin alpha-5/beta-1 90.91% 96.39%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 90.49% 99.23%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 90.03% 94.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.09% 99.17%
CHEMBL4040 P28482 MAP kinase ERK2 86.75% 83.82%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 86.52% 96.00%
CHEMBL3401 O75469 Pregnane X receptor 86.31% 94.73%
CHEMBL2292 Q13627 Dual-specificity tyrosine-phosphorylation regulated kinase 1A 83.96% 93.24%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.32% 95.56%
CHEMBL4225 P49760 Dual specificity protein kinase CLK2 82.94% 80.96%
CHEMBL1781 P11387 DNA topoisomerase I 82.63% 97.00%
CHEMBL1868 P17948 Vascular endothelial growth factor receptor 1 82.41% 96.47%
CHEMBL1937 Q92769 Histone deacetylase 2 82.23% 94.75%
CHEMBL2378 P30307 Dual specificity phosphatase Cdc25C 82.13% 96.67%
CHEMBL4208 P20618 Proteasome component C5 81.69% 90.00%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 81.19% 95.50%
CHEMBL1287628 Q9Y5S8 NADPH oxidase 1 80.23% 95.48%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 180092
LOTUS LTS0132234
wikiData Q82898204