UDP-4-Amino-4-deoxy-beta-L-arabinopyranose

Details

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Internal ID 5deb80d9-c49b-4b51-887e-a555c72acd87
Taxonomy Nucleosides, nucleotides, and analogues > Pyrimidine nucleotides > Pyrimidine ribonucleotides > Pyrimidine ribonucleoside diphosphates
IUPAC Name [(2R,3R,4S,5S)-5-amino-3,4-dihydroxyoxan-2-yl] [[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] hydrogen phosphate
SMILES (Canonical) C1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)O)O)N
SMILES (Isomeric) C1[C@@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)O)O)N
InChI InChI=1S/C14H23N3O15P2/c15-5-3-28-13(11(22)8(5)19)31-34(26,27)32-33(24,25)29-4-6-9(20)10(21)12(30-6)17-2-1-7(18)16-14(17)23/h1-2,5-6,8-13,19-22H,3-4,15H2,(H,24,25)(H,26,27)(H,16,18,23)/t5-,6+,8-,9+,10+,11+,12+,13+/m0/s1
InChI Key GWBAKYBSWHQNMQ-IAZOVDBXSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C14H23N3O15P2
Molecular Weight 535.29 g/mol
Exact Mass 535.06044103 g/mol
Topological Polar Surface Area (TPSA) 277.00 Ų
XlogP -9.10
Atomic LogP (AlogP) -4.19
H-Bond Acceptor 15
H-Bond Donor 8
Rotatable Bonds 8

Synonyms

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UDP-beta-L-Ara4N
UDP-L-Ara4N
UDP-4-amino-4-deoxy-L-arabinose
uridine 5'-[3-(4-amino-4-deoxy-beta-L-arabinopyranosyl) dihydrogen diphosphate]
(2r,3r,4s,5s)-5-Amino-3,4-Dihydroxytetrahydro-2h-Pyran-2-Yl [(2r,3s,4r,5r)-5-(2,4-Dioxo-3,4-Dihydropyrimidin-1(2h)-Yl)-3,4-Dihydroxytetrahydrofuran-2-Yl]methyl Dihydrogen Diphosphate
CHEBI:47025
DTXSID701343903
Q27120762
(2R,3R,4S,5S)-5-amino-3,4-dihydroxytetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)
[(2R,3R,4S,5S)-5-amino-3,4-dihydroxyoxan-2-yl] [[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] hydrogen phosphate
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of UDP-4-Amino-4-deoxy-beta-L-arabinopyranose

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8523 85.23%
Caco-2 - 0.8999 89.99%
Blood Brain Barrier - 0.7500 75.00%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Nucleus 0.4095 40.95%
OATP2B1 inhibitior - 0.8585 85.85%
OATP1B1 inhibitior + 0.9352 93.52%
OATP1B3 inhibitior + 0.9412 94.12%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.9567 95.67%
BSEP inhibitior - 0.5096 50.96%
P-glycoprotein inhibitior - 0.5706 57.06%
P-glycoprotein substrate - 0.6830 68.30%
CYP3A4 substrate + 0.6284 62.84%
CYP2C9 substrate - 0.5961 59.61%
CYP2D6 substrate - 0.8497 84.97%
CYP3A4 inhibition - 0.6343 63.43%
CYP2C9 inhibition - 0.8745 87.45%
CYP2C19 inhibition - 0.8337 83.37%
CYP2D6 inhibition - 0.8686 86.86%
CYP1A2 inhibition - 0.8914 89.14%
CYP2C8 inhibition - 0.6622 66.22%
CYP inhibitory promiscuity - 0.8675 86.75%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.8900 89.00%
Carcinogenicity (trinary) Non-required 0.4760 47.60%
Eye corrosion - 0.9839 98.39%
Eye irritation - 0.9517 95.17%
Skin irritation - 0.7857 78.57%
Skin corrosion - 0.9310 93.10%
Ames mutagenesis - 0.5300 53.00%
Human Ether-a-go-go-Related Gene inhibition - 0.3797 37.97%
Micronuclear + 0.9700 97.00%
Hepatotoxicity + 0.6338 63.38%
skin sensitisation - 0.8556 85.56%
Respiratory toxicity + 0.8111 81.11%
Reproductive toxicity + 0.9889 98.89%
Mitochondrial toxicity + 0.9375 93.75%
Nephrotoxicity - 0.8961 89.61%
Acute Oral Toxicity (c) III 0.5423 54.23%
Estrogen receptor binding + 0.6394 63.94%
Androgen receptor binding + 0.7611 76.11%
Thyroid receptor binding - 0.5186 51.86%
Glucocorticoid receptor binding - 0.4802 48.02%
Aromatase binding + 0.5584 55.84%
PPAR gamma + 0.6411 64.11%
Honey bee toxicity - 0.6625 66.25%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.6400 64.00%
Fish aquatic toxicity - 0.5162 51.62%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.20% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 96.53% 97.09%
CHEMBL226 P30542 Adenosine A1 receptor 95.29% 95.93%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 93.19% 80.33%
CHEMBL2123 P51582 Pyrimidinergic receptor P2Y4 92.99% 93.39%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 89.65% 91.11%
CHEMBL2581 P07339 Cathepsin D 88.68% 98.95%
CHEMBL3230 O95977 Sphingosine 1-phosphate receptor Edg-6 88.60% 94.01%
CHEMBL3137261 O14744 PRMT5/MEP50 complex 86.87% 100.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.44% 94.45%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 84.92% 86.92%
CHEMBL5957 P21589 5'-nucleotidase 84.58% 97.78%
CHEMBL253 P34972 Cannabinoid CB2 receptor 83.97% 97.25%
CHEMBL1806 P11388 DNA topoisomerase II alpha 83.67% 89.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.31% 95.89%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 81.50% 89.62%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 81.12% 95.56%
CHEMBL3384 Q16512 Protein kinase N1 80.81% 80.71%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 80.68% 94.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 17756769
LOTUS LTS0120848
wikiData Q27120762