Tyrocidine A

Details

Top
Internal ID 1a99df52-2833-4c1b-a59c-02064bb8a2b1
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Peptides > Cyclic peptides
IUPAC Name 3-[(3R,6S,9S,12S,15S,18S,21S,24R,27S,30S)-21-(2-amino-2-oxoethyl)-9-(3-aminopropyl)-3,24,27-tribenzyl-15-[(4-hydroxyphenyl)methyl]-6-(2-methylpropyl)-2,5,8,11,14,17,20,23,26,29-decaoxo-12-propan-2-yl-1,4,7,10,13,16,19,22,25,28-decazabicyclo[28.3.0]tritriacontan-18-yl]propanamide
SMILES (Canonical) CC(C)CC1C(=O)NC(C(=O)N2CCCC2C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NC(C(=O)N1)CCCN)C(C)C)CC3=CC=C(C=C3)O)CCC(=O)N)CC(=O)N)CC4=CC=CC=C4)CC5=CC=CC=C5)CC6=CC=CC=C6
SMILES (Isomeric) CC(C)C[C@H]1C(=O)N[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@H](C(=O)N[C@@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N1)CCCN)C(C)C)CC3=CC=C(C=C3)O)CCC(=O)N)CC(=O)N)CC4=CC=CC=C4)CC5=CC=CC=C5)CC6=CC=CC=C6
InChI InChI=1S/C66H87N13O13/c1-38(2)32-47-59(85)77-52(36-42-20-12-7-13-21-42)66(92)79-31-15-23-53(79)64(90)76-49(34-41-18-10-6-11-19-41)61(87)74-48(33-40-16-8-5-9-17-40)60(86)75-51(37-55(69)82)62(88)70-46(28-29-54(68)81)58(84)73-50(35-43-24-26-44(80)27-25-43)63(89)78-56(39(3)4)65(91)71-45(22-14-30-67)57(83)72-47/h5-13,16-21,24-27,38-39,45-53,56,80H,14-15,22-23,28-37,67H2,1-4H3,(H2,68,81)(H2,69,82)(H,70,88)(H,71,91)(H,72,83)(H,73,84)(H,74,87)(H,75,86)(H,76,90)(H,77,85)(H,78,89)/t45-,46-,47-,48+,49-,50-,51-,52+,53-,56-/m0/s1
InChI Key GSXRBRIWJGAPDU-BBVRJQLQSA-N
Popularity 108 references in papers

Physical and Chemical Properties

Top
Molecular Formula C66H87N13O13
Molecular Weight 1270.50 g/mol
Exact Mass 1269.65462988 g/mol
Topological Polar Surface Area (TPSA) 415.00 Ų
XlogP 2.80
Atomic LogP (AlogP) -0.39
H-Bond Acceptor 14
H-Bond Donor 13
Rotatable Bonds 19

Synonyms

Top
Graminic acid
1481-70-5
STREPTOCIDIN O
TYROCIDIN A
UNII-V134656H89
TYROCIDINE A [MI]
Tyrocidine A, hydrochloride
3-[(3R,6S,9S,12S,15S,18S,21S,24R,27S,30S)-21-(2-amino-2-oxoethyl)-9-(3-aminopropyl)-3,24,27-tribenzyl-15-[(4-hydroxyphenyl)methyl]-6-(2-methylpropyl)-2,5,8,11,14,17,20,23,26,29-decaoxo-12-propan-2-yl-1,4,7,10,13,16,19,22,25,28-decazabicyclo[28.3.0]tritriacontan-18-yl]propanamide
cyclo(L-asparaginyl-L-glutaminyl-L-tyrosyl-L-valyl-L-ornithyl-L-leucyl-D-phenylalanyl-L-prolyl-L-phenylalanyl-D-phenylalanyl)
cyclo-(D-PheProPhe-D-PheAsnGlnTyrValOrnLeu)
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of Tyrocidine A

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8105 81.05%
Caco-2 - 0.8668 86.68%
Blood Brain Barrier - 0.9750 97.50%
Human oral bioavailability - 0.8000 80.00%
Subcellular localzation Mitochondria 0.5682 56.82%
OATP2B1 inhibitior - 0.7157 71.57%
OATP1B1 inhibitior + 0.9133 91.33%
OATP1B3 inhibitior + 0.9477 94.77%
MATE1 inhibitior - 0.8600 86.00%
OCT2 inhibitior - 0.7500 75.00%
BSEP inhibitior + 0.9539 95.39%
P-glycoprotein inhibitior + 0.7465 74.65%
P-glycoprotein substrate + 0.8834 88.34%
CYP3A4 substrate + 0.6801 68.01%
CYP2C9 substrate - 0.8005 80.05%
CYP2D6 substrate - 0.7239 72.39%
CYP3A4 inhibition - 0.8590 85.90%
CYP2C9 inhibition - 0.8578 85.78%
CYP2C19 inhibition - 0.8160 81.60%
CYP2D6 inhibition - 0.8946 89.46%
CYP1A2 inhibition - 0.9656 96.56%
CYP2C8 inhibition + 0.6819 68.19%
CYP inhibitory promiscuity - 0.9262 92.62%
UGT catelyzed + 0.7000 70.00%
Carcinogenicity (binary) - 0.8500 85.00%
Carcinogenicity (trinary) Non-required 0.6385 63.85%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.8988 89.88%
Skin irritation - 0.7921 79.21%
Skin corrosion - 0.9305 93.05%
Ames mutagenesis - 0.7200 72.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6449 64.49%
Micronuclear + 0.8400 84.00%
Hepatotoxicity + 0.5034 50.34%
skin sensitisation - 0.8948 89.48%
Respiratory toxicity + 0.8444 84.44%
Reproductive toxicity + 0.9556 95.56%
Mitochondrial toxicity + 0.9125 91.25%
Nephrotoxicity - 0.7182 71.82%
Acute Oral Toxicity (c) III 0.5694 56.94%
Estrogen receptor binding + 0.7728 77.28%
Androgen receptor binding + 0.6953 69.53%
Thyroid receptor binding + 0.5789 57.89%
Glucocorticoid receptor binding + 0.6533 65.33%
Aromatase binding + 0.6488 64.88%
PPAR gamma + 0.7977 79.77%
Honey bee toxicity - 0.8231 82.31%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.5000 50.00%
Fish aquatic toxicity + 0.8086 80.86%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 99.87% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 99.31% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 97.45% 95.56%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.43% 91.11%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 97.11% 85.14%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 96.04% 94.45%
CHEMBL2069156 Q14145 Kelch-like ECH-associated protein 1 94.41% 82.38%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 94.01% 93.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.78% 97.09%
CHEMBL5608 Q16288 NT-3 growth factor receptor 93.66% 95.89%
CHEMBL2693 Q9UIQ6 Cystinyl aminopeptidase 92.13% 97.64%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 89.26% 95.89%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 88.89% 82.69%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.71% 99.17%
CHEMBL4040 P28482 MAP kinase ERK2 88.70% 83.82%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 88.24% 96.47%
CHEMBL5103 Q969S8 Histone deacetylase 10 88.10% 90.08%
CHEMBL5805 Q9NR97 Toll-like receptor 8 87.79% 96.25%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.69% 86.33%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 87.08% 90.71%
CHEMBL3524 P56524 Histone deacetylase 4 86.94% 92.97%
CHEMBL3392948 Q9NP59 Solute carrier family 40 member 1 85.98% 95.00%
CHEMBL5852 Q96P65 Pyroglutamylated RFamide peptide receptor 84.71% 85.00%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 82.85% 95.50%
CHEMBL1902 P62942 FK506-binding protein 1A 81.20% 97.05%
CHEMBL4296 Q15858 Sodium channel protein type IX alpha subunit 81.11% 96.11%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 80.81% 91.71%
CHEMBL221 P23219 Cyclooxygenase-1 80.75% 90.17%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 16129635
LOTUS LTS0228758
wikiData Q3546357