Sydowinin B

Details

Top
Internal ID 6ca4866f-c5a8-4ad7-8d16-46f5afbf6308
Taxonomy Organoheterocyclic compounds > Benzopyrans > 1-benzopyrans > Xanthones
IUPAC Name methyl 2,8-dihydroxy-6-(hydroxymethyl)-9-oxoxanthene-1-carboxylate
SMILES (Canonical) COC(=O)C1=C(C=CC2=C1C(=O)C3=C(C=C(C=C3O2)CO)O)O
SMILES (Isomeric) COC(=O)C1=C(C=CC2=C1C(=O)C3=C(C=C(C=C3O2)CO)O)O
InChI InChI=1S/C16H12O7/c1-22-16(21)13-8(18)2-3-10-14(13)15(20)12-9(19)4-7(6-17)5-11(12)23-10/h2-5,17-19H,6H2,1H3
InChI Key SSBSKLSIZKVBFF-UHFFFAOYSA-N
Popularity 4 references in papers

Physical and Chemical Properties

Top
Molecular Formula C16H12O7
Molecular Weight 316.26 g/mol
Exact Mass 316.05830272 g/mol
Topological Polar Surface Area (TPSA) 113.00 Ų
XlogP 2.30
Atomic LogP (AlogP) 1.64
H-Bond Acceptor 7
H-Bond Donor 3
Rotatable Bonds 2

Synonyms

Top
MS-347b
58450-00-3
R78YLI0R53
methyl 2,8-dihydroxy-6-(hydroxymethyl)-9-oxoxanthene-1-carboxylate
Methyl 2,8-dihydroxy-6-(hydroxymethyl)-9-oxo-xanthene-1-carboxylate
CHEBI:68228
9H-Xanthene-1-carboxylic acid, 2,8-dihydroxy-6-(hydroxymethyl)-9-oxo-, methyl ester
RefChem:186929
UNII-R78YLI0R53
orb1693810
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of Sydowinin B

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8479 84.79%
Caco-2 - 0.7288 72.88%
Blood Brain Barrier - 0.9000 90.00%
Human oral bioavailability + 0.5286 52.86%
Subcellular localzation Mitochondria 0.7933 79.33%
OATP2B1 inhibitior - 0.5633 56.33%
OATP1B1 inhibitior + 0.8471 84.71%
OATP1B3 inhibitior + 0.9646 96.46%
MATE1 inhibitior - 0.6800 68.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.6792 67.92%
P-glycoprotein inhibitior - 0.7884 78.84%
P-glycoprotein substrate - 0.8192 81.92%
CYP3A4 substrate + 0.5239 52.39%
CYP2C9 substrate - 0.5744 57.44%
CYP2D6 substrate - 0.8685 86.85%
CYP3A4 inhibition - 0.8086 80.86%
CYP2C9 inhibition + 0.7563 75.63%
CYP2C19 inhibition - 0.6418 64.18%
CYP2D6 inhibition - 0.8943 89.43%
CYP1A2 inhibition - 0.5789 57.89%
CYP2C8 inhibition + 0.5195 51.95%
CYP inhibitory promiscuity + 0.5000 50.00%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.9113 91.13%
Carcinogenicity (trinary) Non-required 0.6883 68.83%
Eye corrosion - 0.9799 97.99%
Eye irritation + 0.7586 75.86%
Skin irritation - 0.7911 79.11%
Skin corrosion - 0.9668 96.68%
Ames mutagenesis + 0.7636 76.36%
Human Ether-a-go-go-Related Gene inhibition - 0.7169 71.69%
Micronuclear + 0.6874 68.74%
Hepatotoxicity - 0.6198 61.98%
skin sensitisation - 0.9467 94.67%
Respiratory toxicity + 0.6444 64.44%
Reproductive toxicity + 0.7444 74.44%
Mitochondrial toxicity + 0.7125 71.25%
Nephrotoxicity - 0.6396 63.96%
Acute Oral Toxicity (c) III 0.5394 53.94%
Estrogen receptor binding + 0.7741 77.41%
Androgen receptor binding + 0.7960 79.60%
Thyroid receptor binding - 0.7066 70.66%
Glucocorticoid receptor binding + 0.8888 88.88%
Aromatase binding + 0.6595 65.95%
PPAR gamma + 0.7366 73.66%
Honey bee toxicity - 0.9344 93.44%
Biodegradation - 0.7500 75.00%
Crustacea aquatic toxicity - 0.7400 74.00%
Fish aquatic toxicity + 0.8985 89.85%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.93% 91.11%
CHEMBL2581 P07339 Cathepsin D 95.19% 98.95%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.81% 94.45%
CHEMBL3401 O75469 Pregnane X receptor 90.40% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.90% 99.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.70% 86.33%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 86.71% 94.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 83.57% 96.09%
CHEMBL5409 Q8TDU6 G-protein coupled bile acid receptor 1 81.65% 93.65%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 81.42% 96.95%
CHEMBL3864 Q06124 Protein-tyrosine phosphatase 2C 80.52% 94.42%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 45359153
LOTUS LTS0026095
wikiData Q27136721