Stemmadenine

Details

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Internal ID 486a7e97-f4e8-45e2-94e2-72ea3491c65b
Taxonomy Alkaloids and derivatives > Strychnos alkaloids
IUPAC Name methyl (1R,2S,16E)-16-ethylidene-2-(hydroxymethyl)-4,14-diazatetracyclo[12.2.2.03,11.05,10]octadeca-3(11),5,7,9-tetraene-2-carboxylate
SMILES (Canonical) CC=C1CN2CCC1C(C3=C(CC2)C4=CC=CC=C4N3)(CO)C(=O)OC
SMILES (Isomeric) C/C=C\1/CN2CC[C@H]1[C@](C3=C(CC2)C4=CC=CC=C4N3)(CO)C(=O)OC
InChI InChI=1S/C21H26N2O3/c1-3-14-12-23-10-8-16-15-6-4-5-7-18(15)22-19(16)21(13-24,20(25)26-2)17(14)9-11-23/h3-7,17,22,24H,8-13H2,1-2H3/b14-3-/t17-,21+/m1/s1
InChI Key MBXJCHZRHROMQA-YVDMJPQFSA-N
Popularity 6 references in papers

Physical and Chemical Properties

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Molecular Formula C21H26N2O3
Molecular Weight 354.40 g/mol
Exact Mass 354.19434270 g/mol
Topological Polar Surface Area (TPSA) 65.60 Ų
XlogP 1.80
Atomic LogP (AlogP) 2.40
H-Bond Acceptor 4
H-Bond Donor 2
Rotatable Bonds 2

Synonyms

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15beta-stemmadenine
15-beta-stemmadenine
CHEMBL486212
SCHEMBL22919364
CHEBI:142656
Q21099582
methyl (1R,2S,16E)-16-ethylidene-2-(hydroxymethyl)-4,14-diazatetracyclo[12.2.2.03,11.05,10]octadeca-3(11),5,7,9-tetraene-2-carboxylate
methyl (5E,6R,7S)-5-ethylidene-7-(hydroxymethyl)-1,4,5,6,7,8-hexahydro-2H-3,6-ethanoazonino[5,4-b]indole-7-carboxylate

2D Structure

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2D Structure of Stemmadenine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9066 90.66%
Caco-2 + 0.7310 73.10%
Blood Brain Barrier + 0.5250 52.50%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Mitochondria 0.6544 65.44%
OATP2B1 inhibitior - 0.8565 85.65%
OATP1B1 inhibitior + 0.8550 85.50%
OATP1B3 inhibitior + 0.9372 93.72%
MATE1 inhibitior - 0.8050 80.50%
OCT2 inhibitior - 0.7250 72.50%
BSEP inhibitior + 0.7823 78.23%
P-glycoprotein inhibitior + 0.6506 65.06%
P-glycoprotein substrate + 0.5707 57.07%
CYP3A4 substrate + 0.6778 67.78%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.3548 35.48%
CYP3A4 inhibition - 0.9163 91.63%
CYP2C9 inhibition - 0.6994 69.94%
CYP2C19 inhibition - 0.8749 87.49%
CYP2D6 inhibition - 0.5774 57.74%
CYP1A2 inhibition - 0.5958 59.58%
CYP2C8 inhibition + 0.4673 46.73%
CYP inhibitory promiscuity - 0.7424 74.24%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.6667 66.67%
Eye corrosion - 0.9877 98.77%
Eye irritation - 0.9849 98.49%
Skin irritation - 0.7725 77.25%
Skin corrosion - 0.9361 93.61%
Ames mutagenesis - 0.7100 71.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6602 66.02%
Micronuclear + 0.5700 57.00%
Hepatotoxicity - 0.6931 69.31%
skin sensitisation - 0.8384 83.84%
Respiratory toxicity + 0.9000 90.00%
Reproductive toxicity + 0.9222 92.22%
Mitochondrial toxicity + 0.9875 98.75%
Nephrotoxicity - 0.6789 67.89%
Acute Oral Toxicity (c) III 0.6337 63.37%
Estrogen receptor binding - 0.4942 49.42%
Androgen receptor binding + 0.6596 65.96%
Thyroid receptor binding - 0.5234 52.34%
Glucocorticoid receptor binding + 0.6467 64.67%
Aromatase binding - 0.5705 57.05%
PPAR gamma - 0.6211 62.11%
Honey bee toxicity - 0.8796 87.96%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.6400 64.00%
Fish aquatic toxicity + 0.9168 91.68%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.82% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.58% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 96.97% 94.45%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 95.50% 95.56%
CHEMBL2581 P07339 Cathepsin D 95.40% 98.95%
CHEMBL4040 P28482 MAP kinase ERK2 93.56% 83.82%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 93.11% 85.14%
CHEMBL3137262 O60341 LSD1/CoREST complex 89.90% 97.09%
CHEMBL5028 O14672 ADAM10 89.49% 97.50%
CHEMBL5608 Q16288 NT-3 growth factor receptor 88.65% 95.89%
CHEMBL3310 Q96DB2 Histone deacetylase 11 85.51% 88.56%
CHEMBL216 P11229 Muscarinic acetylcholine receptor M1 82.83% 94.23%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 82.27% 99.23%
CHEMBL1806 P11388 DNA topoisomerase II alpha 81.94% 89.00%
CHEMBL228 P31645 Serotonin transporter 80.97% 95.51%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 80.73% 95.83%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Tabernaemontana alternifolia

Cross-Links

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PubChem 10066724
LOTUS LTS0243105
wikiData Q21099582