Spirocardin B

Details

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Internal ID 8e162c0f-9ea8-48e2-92f3-39020f7511a0
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Diterpenoids > Colensane and clerodane diterpenoids
IUPAC Name 4-[2-[2-(1,2-dihydroxyethyl)oxiran-2-yl]-2-hydroxyethyl]-2-hydroxy-3,4,8,8a-tetramethyl-3,4a,5,6-tetrahydro-2H-naphthalen-1-one
SMILES (Canonical) CC1C(C(=O)C2(C(C1(C)CC(C3(CO3)C(CO)O)O)CCC=C2C)C)O
SMILES (Isomeric) CC1C(C(=O)C2(C(C1(C)CC(C3(CO3)C(CO)O)O)CCC=C2C)C)O
InChI InChI=1S/C20H32O6/c1-11-6-5-7-13-18(3,12(2)16(24)17(25)19(11,13)4)8-14(22)20(10-26-20)15(23)9-21/h6,12-16,21-24H,5,7-10H2,1-4H3
InChI Key PDPQILPMCDOHDB-UHFFFAOYSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C20H32O6
Molecular Weight 368.50 g/mol
Exact Mass 368.21988874 g/mol
Topological Polar Surface Area (TPSA) 111.00 Ų
XlogP 0.50
Atomic LogP (AlogP) 0.81
H-Bond Acceptor 6
H-Bond Donor 4
Rotatable Bonds 5

Synonyms

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99401-77-1
4-{2-[2-(1,2-dihydroxyethyl)oxiran-2-yl]-2-hydroxyethyl}-2-hydroxy-3,4,8,8a-tetramethyl-3,4,4a,5,6,8a-hexahydronaphthalen-1(2h)-one
DTXSID50912720
1(2H)-Naphthalenone, 3,4,4a,5,6,8a-hexahydro-4-(2-(2-(1,2-dihydroxyethyl)oxiranyl)-2-hydroxyethyl)-2-hydroxy-3,4,8,8a-tetramethyl-
1(2H)-Naphthalenone, 4-(2-(2-(1,2-dihydroxyethyl)oxiranyl)-2-hydroxyethyl)-3,4,4a,5,6,8a-hexahydro-2-hydroxy-3,4,8,8a-tetramethyl-

2D Structure

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2D Structure of Spirocardin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9102 91.02%
Caco-2 - 0.7133 71.33%
Blood Brain Barrier + 0.6241 62.41%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.6845 68.45%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8836 88.36%
OATP1B3 inhibitior + 0.8892 88.92%
MATE1 inhibitior - 0.9812 98.12%
OCT2 inhibitior - 0.5451 54.51%
BSEP inhibitior + 0.5526 55.26%
P-glycoprotein inhibitior - 0.8493 84.93%
P-glycoprotein substrate - 0.6494 64.94%
CYP3A4 substrate + 0.5963 59.63%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8072 80.72%
CYP3A4 inhibition - 0.8032 80.32%
CYP2C9 inhibition - 0.8279 82.79%
CYP2C19 inhibition - 0.8183 81.83%
CYP2D6 inhibition - 0.9305 93.05%
CYP1A2 inhibition - 0.8535 85.35%
CYP2C8 inhibition - 0.8222 82.22%
CYP inhibitory promiscuity - 0.9574 95.74%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6640 66.40%
Eye corrosion - 0.9898 98.98%
Eye irritation - 0.9827 98.27%
Skin irritation - 0.6041 60.41%
Skin corrosion - 0.9474 94.74%
Ames mutagenesis - 0.6170 61.70%
Human Ether-a-go-go-Related Gene inhibition - 0.5807 58.07%
Micronuclear - 0.7900 79.00%
Hepatotoxicity - 0.6014 60.14%
skin sensitisation - 0.8579 85.79%
Respiratory toxicity + 0.5333 53.33%
Reproductive toxicity + 0.9000 90.00%
Mitochondrial toxicity + 0.6875 68.75%
Nephrotoxicity + 0.7104 71.04%
Acute Oral Toxicity (c) III 0.6164 61.64%
Estrogen receptor binding + 0.6161 61.61%
Androgen receptor binding + 0.5721 57.21%
Thyroid receptor binding + 0.5878 58.78%
Glucocorticoid receptor binding + 0.7271 72.71%
Aromatase binding + 0.6799 67.99%
PPAR gamma - 0.6699 66.99%
Honey bee toxicity - 0.8495 84.95%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.6600 66.00%
Fish aquatic toxicity + 0.9179 91.79%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.01% 91.11%
CHEMBL2581 P07339 Cathepsin D 95.84% 98.95%
CHEMBL253 P34972 Cannabinoid CB2 receptor 94.62% 97.25%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.25% 97.09%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 88.31% 96.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.95% 100.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.86% 94.45%
CHEMBL1806 P11388 DNA topoisomerase II alpha 86.80% 89.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.43% 95.56%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 81.67% 90.71%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 81.65% 95.89%
CHEMBL3401 O75469 Pregnane X receptor 80.92% 94.73%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Rosa henryi
Rubus chingii var. suavissimus
Rubus parvifolius
Rubus pedatus
Sanguisorba officinalis

Cross-Links

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PubChem 127322
LOTUS LTS0138389
wikiData Q104994754