Spinacoside D

Details

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Internal ID 077d4846-b896-4529-b30c-407117a74268
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Terpene glycosides > Triterpene glycosides > Triterpene saponins
IUPAC Name (2S,3S,4S,5R,6R)-6-[[(3S,4aR,6aR,6bS,8aS,12aS,14aR,14bR)-8a-carboxy-4,4,6a,6b,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-4-[(S)-carboxy(carboxymethoxy)methoxy]-3,5-dihydroxyoxane-2-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C40H60O14/c1-35(2)14-16-40(34(49)50)17-15-38(6)20(21(40)18-35)8-9-23-37(5)12-11-24(36(3,4)22(37)10-13-39(23,38)7)52-32-27(44)28(26(43)29(54-32)30(45)46)53-33(31(47)48)51-19-25(41)42/h8,21-24,26-29,32-33,43-44H,9-19H2,1-7H3,(H,41,42)(H,45,46)(H,47,48)(H,49,50)/t21-,22-,23+,24-,26-,27+,28-,29-,32+,33-,37-,38+,39+,40-/m0/s1
InChI Key WEUHEQAOZHTARY-JWOAMYESSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C40H60O14
Molecular Weight 764.90 g/mol
Exact Mass 764.39830658 g/mol
Topological Polar Surface Area (TPSA) 227.00 Ų
XlogP 5.80
Atomic LogP (AlogP) 4.69
H-Bond Acceptor 10
H-Bond Donor 6
Rotatable Bonds 10

Synonyms

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28-deglucosyl achyranthoside E
CHEBI:176309
DTXSID901109143
182322-58-3
(2S,3S,4S,5R,6R)-6-[[(3S,4aR,6aR,6bS,8aS,12aS,14aR,14bR)-8a-carboxy-4,4,6a,6b,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-4-[(S)-carboxy(carboxymethoxy)methoxy]-3,5-dihydroxyoxane-2-carboxylic acid
(3I(2))-17-Carboxy-28-norolean-12-en-3-yl 3-O-[(S)-carboxy(carboxymethoxy)methyl]-I(2)-D-glucopyranosiduronic acid

2D Structure

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2D Structure of Spinacoside D

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9358 93.58%
Caco-2 - 0.8692 86.92%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.8695 86.95%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.6963 69.63%
OATP1B3 inhibitior + 0.8187 81.87%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior + 0.5067 50.67%
BSEP inhibitior - 0.4945 49.45%
P-glycoprotein inhibitior + 0.7745 77.45%
P-glycoprotein substrate - 0.6466 64.66%
CYP3A4 substrate + 0.7103 71.03%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8774 87.74%
CYP3A4 inhibition - 0.7333 73.33%
CYP2C9 inhibition - 0.8088 80.88%
CYP2C19 inhibition - 0.8918 89.18%
CYP2D6 inhibition - 0.9384 93.84%
CYP1A2 inhibition - 0.8217 82.17%
CYP2C8 inhibition + 0.7029 70.29%
CYP inhibitory promiscuity - 0.9133 91.33%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6981 69.81%
Eye corrosion - 0.9909 99.09%
Eye irritation - 0.9090 90.90%
Skin irritation + 0.5000 50.00%
Skin corrosion - 0.9475 94.75%
Ames mutagenesis - 0.8200 82.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5762 57.62%
Micronuclear - 0.7400 74.00%
Hepatotoxicity - 0.8250 82.50%
skin sensitisation - 0.8887 88.87%
Respiratory toxicity + 0.5556 55.56%
Reproductive toxicity + 0.9556 95.56%
Mitochondrial toxicity + 0.6250 62.50%
Nephrotoxicity - 0.8759 87.59%
Acute Oral Toxicity (c) III 0.7036 70.36%
Estrogen receptor binding + 0.7385 73.85%
Androgen receptor binding + 0.7203 72.03%
Thyroid receptor binding - 0.6515 65.15%
Glucocorticoid receptor binding + 0.7333 73.33%
Aromatase binding + 0.6619 66.19%
PPAR gamma + 0.7461 74.61%
Honey bee toxicity - 0.7559 75.59%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.6155 61.55%
Fish aquatic toxicity + 0.9828 98.28%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.91% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.71% 91.11%
CHEMBL221 P23219 Cyclooxygenase-1 94.37% 90.17%
CHEMBL2581 P07339 Cathepsin D 94.04% 98.95%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 92.26% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.89% 97.09%
CHEMBL335 P18031 Protein-tyrosine phosphatase 1B 88.23% 95.17%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.78% 99.17%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.59% 95.56%
CHEMBL5608 Q16288 NT-3 growth factor receptor 85.35% 95.89%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 82.22% 93.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.83% 86.33%
CHEMBL5255 O00206 Toll-like receptor 4 80.13% 92.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Pisonia umbellifera

Cross-Links

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PubChem 15834378
LOTUS LTS0062265
wikiData Q105303577