Sodagnitin A

Details

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Internal ID 73022f3e-901f-4abb-8fa4-359dd1cc412f
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name 5-[1-[(2S,6R)-5-[(3R,3aR,5aR,8R,9aR,9bS)-8-hydroxy-3a,6,6,9a-tetramethyl-7-oxo-2,3,4,5,5a,8,9,9b-octahydro-1H-cyclopenta[a]naphthalen-3-yl]-6-hydroxy-3,6-dihydro-2H-pyran-2-yl]ethenyl]-2,2-dimethylfuran-3-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C30H42O6/c1-16(21-14-24(32)28(4,5)36-21)20-10-8-17(26(34)35-20)18-9-11-23-29(18,6)13-12-22-27(2,3)25(33)19(31)15-30(22,23)7/h8,14,18-20,22-23,26,31,34H,1,9-13,15H2,2-7H3/t18-,19+,20-,22-,23-,26+,29-,30-/m0/s1
InChI Key RGYVYGAQTJOSEN-OPSOQUJQSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C30H42O6
Molecular Weight 498.60 g/mol
Exact Mass 498.29813906 g/mol
Topological Polar Surface Area (TPSA) 93.10 Ų
XlogP 4.80
Atomic LogP (AlogP) 4.65
H-Bond Acceptor 6
H-Bond Donor 2
Rotatable Bonds 3

Synonyms

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NSC712400
CHEMBL1973041
NSC-712400
NCI60_039334
3(2H)-Furanone,6S)-5-[(3S,3aS,5aS,8S,9aS,9bR)-~ dodecahydro-8-hydroxy-3a,6,6,9a-tetramethyl-7-oxo-1H-benz~ [e]inden-3-yl]-3,6-dihydro-6-hydroxy-2H-pyran-2-yl]ethenyl]-2,2-dimethyl-, rel-(-)-

2D Structure

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2D Structure of Sodagnitin A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9716 97.16%
Caco-2 - 0.7111 71.11%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.7867 78.67%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8758 87.58%
OATP1B3 inhibitior + 0.8118 81.18%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.7000 70.00%
BSEP inhibitior + 0.9448 94.48%
P-glycoprotein inhibitior + 0.7106 71.06%
P-glycoprotein substrate - 0.5747 57.47%
CYP3A4 substrate + 0.7008 70.08%
CYP2C9 substrate - 0.7943 79.43%
CYP2D6 substrate - 0.8616 86.16%
CYP3A4 inhibition - 0.5838 58.38%
CYP2C9 inhibition - 0.9025 90.25%
CYP2C19 inhibition - 0.9118 91.18%
CYP2D6 inhibition - 0.9507 95.07%
CYP1A2 inhibition - 0.8619 86.19%
CYP2C8 inhibition + 0.5000 50.00%
CYP inhibitory promiscuity - 0.9414 94.14%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.4096 40.96%
Eye corrosion - 0.9903 99.03%
Eye irritation - 0.9271 92.71%
Skin irritation + 0.5983 59.83%
Skin corrosion - 0.8871 88.71%
Ames mutagenesis - 0.8082 80.82%
Human Ether-a-go-go-Related Gene inhibition + 0.6690 66.90%
Micronuclear - 0.7700 77.00%
Hepatotoxicity - 0.5125 51.25%
skin sensitisation - 0.8044 80.44%
Respiratory toxicity + 0.7111 71.11%
Reproductive toxicity + 0.9222 92.22%
Mitochondrial toxicity + 0.9000 90.00%
Nephrotoxicity + 0.6836 68.36%
Acute Oral Toxicity (c) I 0.7992 79.92%
Estrogen receptor binding + 0.7995 79.95%
Androgen receptor binding + 0.7277 72.77%
Thyroid receptor binding + 0.6173 61.73%
Glucocorticoid receptor binding + 0.8226 82.26%
Aromatase binding + 0.7841 78.41%
PPAR gamma + 0.6520 65.20%
Honey bee toxicity - 0.8115 81.15%
Biodegradation - 0.7250 72.50%
Crustacea aquatic toxicity - 0.5300 53.00%
Fish aquatic toxicity + 0.9931 99.31%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.21% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.50% 94.45%
CHEMBL1937 Q92769 Histone deacetylase 2 89.39% 94.75%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.99% 95.56%
CHEMBL2581 P07339 Cathepsin D 87.39% 98.95%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.65% 100.00%
CHEMBL226 P30542 Adenosine A1 receptor 85.21% 95.93%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 85.08% 96.09%
CHEMBL3137262 O60341 LSD1/CoREST complex 84.02% 97.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 83.96% 97.25%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.94% 94.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.72% 95.89%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 82.44% 82.69%
CHEMBL3713062 P10646 Tissue factor pathway inhibitor 82.34% 97.33%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.86% 86.33%
CHEMBL1871 P10275 Androgen Receptor 81.76% 96.43%
CHEMBL1806 P11388 DNA topoisomerase II alpha 81.36% 89.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 80.28% 99.23%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 400502
LOTUS LTS0249541
wikiData Q104664493