Sirodesmin B

Details

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Internal ID 51682492-51c6-4028-b543-fd42b47eae62
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Alpha amino acids and derivatives
IUPAC Name [(1R,3S,4S,5R,7R,10R)-3-hydroxy-10-(hydroxymethyl)-4',4',5',16-tetramethyl-3',9,15-trioxospiro[11,12,13,14-tetrathia-8,16-diazatetracyclo[8.4.2.01,8.03,7]hexadecane-5,2'-oxolane]-4-yl] acetate
SMILES (Canonical) CC1C(C(=O)C2(O1)CC3C(C2OC(=O)C)(CC45N3C(=O)C(N(C4=O)C)(SSSS5)CO)O)(C)C
SMILES (Isomeric) CC1C(C(=O)[C@@]2(O1)C[C@@H]3[C@]([C@@H]2OC(=O)C)(C[C@]45N3C(=O)[C@](N(C4=O)C)(SSSS5)CO)O)(C)C
InChI InChI=1S/C20H26N2O8S4/c1-9-16(3,4)12(25)18(30-9)6-11-17(28,13(18)29-10(2)24)7-19-14(26)21(5)20(8-23,15(27)22(11)19)32-34-33-31-19/h9,11,13,23,28H,6-8H2,1-5H3/t9?,11-,13+,17+,18+,19-,20-/m1/s1
InChI Key HRTWROLCNILHTD-UPHHEOHLSA-N
Popularity 12 references in papers

Physical and Chemical Properties

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Molecular Formula C20H26N2O8S4
Molecular Weight 550.70 g/mol
Exact Mass 550.05720049 g/mol
Topological Polar Surface Area (TPSA) 235.00 Ų
XlogP 0.30
Atomic LogP (AlogP) 0.95
H-Bond Acceptor 12
H-Bond Donor 2
Rotatable Bonds 2

Synonyms

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HRTWROLCNILHTD-UPHHEOHLSA-N

2D Structure

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2D Structure of Sirodesmin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.4612 46.12%
Caco-2 - 0.7088 70.88%
Blood Brain Barrier - 0.7750 77.50%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Mitochondria 0.4570 45.70%
OATP2B1 inhibitior - 0.8595 85.95%
OATP1B1 inhibitior + 0.8376 83.76%
OATP1B3 inhibitior + 0.9319 93.19%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.5228 52.28%
P-glycoprotein inhibitior - 0.4605 46.05%
P-glycoprotein substrate + 0.5576 55.76%
CYP3A4 substrate + 0.6979 69.79%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8545 85.45%
CYP3A4 inhibition - 0.7976 79.76%
CYP2C9 inhibition - 0.7820 78.20%
CYP2C19 inhibition - 0.7590 75.90%
CYP2D6 inhibition - 0.8958 89.58%
CYP1A2 inhibition - 0.8132 81.32%
CYP2C8 inhibition - 0.6809 68.09%
CYP inhibitory promiscuity - 0.9287 92.87%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.8400 84.00%
Carcinogenicity (trinary) Non-required 0.5823 58.23%
Eye corrosion - 0.9814 98.14%
Eye irritation - 0.9337 93.37%
Skin irritation - 0.7585 75.85%
Skin corrosion - 0.9167 91.67%
Ames mutagenesis - 0.5054 50.54%
Human Ether-a-go-go-Related Gene inhibition - 0.4810 48.10%
Micronuclear + 0.8100 81.00%
Hepatotoxicity - 0.5322 53.22%
skin sensitisation - 0.8394 83.94%
Respiratory toxicity + 0.6222 62.22%
Reproductive toxicity + 0.8556 85.56%
Mitochondrial toxicity + 0.8500 85.00%
Nephrotoxicity + 0.6746 67.46%
Acute Oral Toxicity (c) III 0.5204 52.04%
Estrogen receptor binding + 0.7875 78.75%
Androgen receptor binding + 0.7698 76.98%
Thyroid receptor binding + 0.6280 62.80%
Glucocorticoid receptor binding + 0.5797 57.97%
Aromatase binding + 0.5677 56.77%
PPAR gamma + 0.6727 67.27%
Honey bee toxicity - 0.7759 77.59%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity - 0.5550 55.50%
Fish aquatic toxicity + 0.8226 82.26%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.21% 96.09%
CHEMBL2581 P07339 Cathepsin D 95.84% 98.95%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 95.20% 85.14%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 88.75% 96.77%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.83% 86.33%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 87.43% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.90% 94.45%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 83.86% 91.24%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.53% 95.56%
CHEMBL340 P08684 Cytochrome P450 3A4 83.03% 91.19%
CHEMBL1806 P11388 DNA topoisomerase II alpha 82.88% 89.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 101593099
LOTUS LTS0154115
wikiData Q105032842