Secosyrin 1

Details

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Internal ID 9cb4b149-22bf-49d9-926c-ca5bc84daa20
Taxonomy Lipids and lipid-like molecules > Fatty Acyls > Fatty acid esters
IUPAC Name [(3R,4S,5R)-3-hydroxy-8-oxo-1,7-dioxaspiro[4.4]nonan-4-yl] hexanoate
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C13H20O6/c1-2-3-4-5-10(15)19-12-9(14)7-18-13(12)6-11(16)17-8-13/h9,12,14H,2-8H2,1H3/t9-,12+,13-/m1/s1
InChI Key BSPDBROUVLBHSZ-JIMOISOXSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C13H20O6
Molecular Weight 272.29 g/mol
Exact Mass 272.12598835 g/mol
Topological Polar Surface Area (TPSA) 82.10 Ų
XlogP 0.60
Atomic LogP (AlogP) 0.56
H-Bond Acceptor 6
H-Bond Donor 1
Rotatable Bonds 5

Synonyms

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[(3R,4S,5R)-3-Hydroxy-8-oxo-1,7-dioxaspiro[4.4]nonan-4-yl] hexanoate

2D Structure

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2D Structure of Secosyrin 1

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9176 91.76%
Caco-2 + 0.6574 65.74%
Blood Brain Barrier + 0.7750 77.50%
Human oral bioavailability - 0.6429 64.29%
Subcellular localzation Mitochondria 0.7034 70.34%
OATP2B1 inhibitior - 0.8538 85.38%
OATP1B1 inhibitior + 0.8975 89.75%
OATP1B3 inhibitior + 0.9435 94.35%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.6500 65.00%
BSEP inhibitior - 0.7463 74.63%
P-glycoprotein inhibitior - 0.8661 86.61%
P-glycoprotein substrate - 0.5188 51.88%
CYP3A4 substrate + 0.5618 56.18%
CYP2C9 substrate - 0.8042 80.42%
CYP2D6 substrate - 0.8607 86.07%
CYP3A4 inhibition - 0.8246 82.46%
CYP2C9 inhibition - 0.8913 89.13%
CYP2C19 inhibition - 0.8745 87.45%
CYP2D6 inhibition - 0.9518 95.18%
CYP1A2 inhibition - 0.9137 91.37%
CYP2C8 inhibition - 0.8148 81.48%
CYP inhibitory promiscuity - 0.9816 98.16%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.5457 54.57%
Eye corrosion - 0.9816 98.16%
Eye irritation - 0.5780 57.80%
Skin irritation - 0.5192 51.92%
Skin corrosion - 0.9212 92.12%
Ames mutagenesis - 0.7900 79.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6951 69.51%
Micronuclear - 0.8600 86.00%
Hepatotoxicity - 0.5984 59.84%
skin sensitisation - 0.9393 93.93%
Respiratory toxicity - 0.5111 51.11%
Reproductive toxicity - 0.6333 63.33%
Mitochondrial toxicity + 0.6375 63.75%
Nephrotoxicity + 0.7192 71.92%
Acute Oral Toxicity (c) III 0.6090 60.90%
Estrogen receptor binding + 0.7586 75.86%
Androgen receptor binding - 0.7026 70.26%
Thyroid receptor binding - 0.6879 68.79%
Glucocorticoid receptor binding + 0.5658 56.58%
Aromatase binding - 0.8013 80.13%
PPAR gamma - 0.5994 59.94%
Honey bee toxicity - 0.9077 90.77%
Biodegradation - 0.5500 55.00%
Crustacea aquatic toxicity + 0.6041 60.41%
Fish aquatic toxicity + 0.8721 87.21%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 97.90% 98.95%
CHEMBL253 P34972 Cannabinoid CB2 receptor 96.91% 97.25%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.70% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.48% 96.09%
CHEMBL2996 Q05655 Protein kinase C delta 93.98% 97.79%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 93.16% 94.45%
CHEMBL299 P17252 Protein kinase C alpha 92.26% 98.03%
CHEMBL5255 O00206 Toll-like receptor 4 89.81% 92.50%
CHEMBL230 P35354 Cyclooxygenase-2 89.79% 89.63%
CHEMBL1907602 P06493 Cyclin-dependent kinase 1/cyclin B1 87.38% 91.24%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 85.83% 96.77%
CHEMBL340 P08684 Cytochrome P450 3A4 84.84% 91.19%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 84.80% 99.23%
CHEMBL3060 Q9Y345 Glycine transporter 2 84.71% 99.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 84.05% 86.33%
CHEMBL221 P23219 Cyclooxygenase-1 84.01% 90.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.33% 97.09%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 83.04% 94.33%
CHEMBL1806 P11388 DNA topoisomerase II alpha 81.39% 89.00%
CHEMBL1293316 Q9HBX9 Relaxin receptor 1 81.26% 82.50%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 81.11% 100.00%
CHEMBL4227 P25090 Lipoxin A4 receptor 81.05% 100.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 11184852
LOTUS LTS0235209
wikiData Q104945350