Sarmentosine; Sarmentosine (glycoside)

Details

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Internal ID 7256d5d2-86a7-4354-a081-b6de7a8dfc07
Taxonomy Lipids and lipid-like molecules > Fatty Acyls > Fatty acyl glycosides > Fatty acyl glycosides of mono- and disaccharides
IUPAC Name 2-(hydroxymethyl)-4-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybut-2-enenitrile
SMILES (Canonical) C(C=C(CO)C#N)OC1C(C(C(C(O1)CO)O)O)O
SMILES (Isomeric) C(C=C(CO)C#N)OC1C(C(C(C(O1)CO)O)O)O
InChI InChI=1S/C11H17NO7/c12-3-6(4-13)1-2-18-11-10(17)9(16)8(15)7(5-14)19-11/h1,7-11,13-17H,2,4-5H2
InChI Key FWAYDNJCBHNWQD-UHFFFAOYSA-N
Popularity 5 references in papers

Physical and Chemical Properties

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Molecular Formula C11H17NO7
Molecular Weight 275.25 g/mol
Exact Mass 275.10050188 g/mol
Topological Polar Surface Area (TPSA) 143.00 Ų
XlogP -3.10
Atomic LogP (AlogP) -2.75
H-Bond Acceptor 8
H-Bond Donor 5
Rotatable Bonds 5

Synonyms

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ZINC04097533
2-(hydroxymethyl)-4-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybut-2-enenitrile
(E)-2-(hydroxymethyl)-4-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxybut-2-enenitrile

2D Structure

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2D Structure of Sarmentosine; Sarmentosine (glycoside)

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8785 87.85%
Caco-2 - 0.8508 85.08%
Blood Brain Barrier + 0.5250 52.50%
Human oral bioavailability - 0.6286 62.86%
Subcellular localzation Mitochondria 0.7541 75.41%
OATP2B1 inhibitior - 0.8598 85.98%
OATP1B1 inhibitior + 0.9269 92.69%
OATP1B3 inhibitior + 0.9554 95.54%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.9000 90.00%
BSEP inhibitior - 0.9613 96.13%
P-glycoprotein inhibitior - 0.9396 93.96%
P-glycoprotein substrate - 0.9695 96.95%
CYP3A4 substrate - 0.5000 50.00%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8433 84.33%
CYP3A4 inhibition - 0.9496 94.96%
CYP2C9 inhibition - 0.8562 85.62%
CYP2C19 inhibition - 0.8337 83.37%
CYP2D6 inhibition - 0.9105 91.05%
CYP1A2 inhibition - 0.8495 84.95%
CYP2C8 inhibition - 0.7652 76.52%
CYP inhibitory promiscuity - 0.8069 80.69%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6462 64.62%
Eye corrosion - 0.9824 98.24%
Eye irritation - 0.9706 97.06%
Skin irritation - 0.8203 82.03%
Skin corrosion - 0.9456 94.56%
Ames mutagenesis - 0.6300 63.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6248 62.48%
Micronuclear - 0.7800 78.00%
Hepatotoxicity - 0.7966 79.66%
skin sensitisation - 0.8605 86.05%
Respiratory toxicity - 0.7333 73.33%
Reproductive toxicity + 0.5333 53.33%
Mitochondrial toxicity - 0.5625 56.25%
Nephrotoxicity + 0.5121 51.21%
Acute Oral Toxicity (c) III 0.4612 46.12%
Estrogen receptor binding - 0.7453 74.53%
Androgen receptor binding - 0.6506 65.06%
Thyroid receptor binding - 0.5541 55.41%
Glucocorticoid receptor binding - 0.6037 60.37%
Aromatase binding - 0.5105 51.05%
PPAR gamma + 0.5292 52.92%
Honey bee toxicity - 0.5994 59.94%
Biodegradation + 0.5250 52.50%
Crustacea aquatic toxicity - 0.7900 79.00%
Fish aquatic toxicity - 0.7165 71.65%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL226 P30542 Adenosine A1 receptor 94.36% 95.93%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 92.60% 86.92%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 89.81% 96.09%
CHEMBL3589 P55263 Adenosine kinase 88.58% 98.05%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 87.14% 95.83%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 86.20% 91.11%
CHEMBL3401 O75469 Pregnane X receptor 81.53% 94.73%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 80.52% 96.00%
CHEMBL3060 Q9Y345 Glycine transporter 2 80.22% 99.17%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Rhodiola chrysanthemifolia subsp. sacra

Cross-Links

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PubChem 4479456
LOTUS LTS0267544
wikiData Q105003072