rubinaphthin A methyl ester

Details

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Internal ID 273e8cd5-244e-4142-b087-d4efee0b2d92
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > Phenolic glycosides
IUPAC Name methyl 1-hydroxy-4-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxynaphthalene-2-carboxylate
SMILES (Canonical) COC(=O)C1=C(C2=CC=CC=C2C(=C1)OC3C(C(C(C(O3)CO)O)O)O)O
SMILES (Isomeric) COC(=O)C1=C(C2=CC=CC=C2C(=C1)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O
InChI InChI=1S/C18H20O9/c1-25-17(24)10-6-11(8-4-2-3-5-9(8)13(10)20)26-18-16(23)15(22)14(21)12(7-19)27-18/h2-6,12,14-16,18-23H,7H2,1H3/t12-,14-,15+,16-,18-/m1/s1
InChI Key ZZJSOQXSWDNDJW-AEWXESQOSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C18H20O9
Molecular Weight 380.30 g/mol
Exact Mass 380.11073221 g/mol
Topological Polar Surface Area (TPSA) 146.00 Ų
XlogP 1.10
Atomic LogP (AlogP) -0.49
H-Bond Acceptor 9
H-Bond Donor 5
Rotatable Bonds 4

Synonyms

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Rubinaphtin A methyl ester
CHEBI:69514
DTXSID001134006
Q27137853
2-carbomethoxy-1,4-naphthohydroquinone-4-O-beta-D-glucopyranoside
methyl 4-(beta-D-glucopyranosyloxy)-1-hydroxynaphthalene-2-carboxylate
2-Naphthalenecarboxylic acid, 4-(beta-D-glucopyranosyloxy)-1-hydroxy-, methyl ester
1338589-03-9

2D Structure

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2D Structure of rubinaphthin A methyl ester

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.4880 48.80%
Caco-2 - 0.8439 84.39%
Blood Brain Barrier - 0.8000 80.00%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Mitochondria 0.5216 52.16%
OATP2B1 inhibitior - 0.5692 56.92%
OATP1B1 inhibitior + 0.8260 82.60%
OATP1B3 inhibitior + 0.9680 96.80%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior - 0.6001 60.01%
P-glycoprotein inhibitior - 0.8468 84.68%
P-glycoprotein substrate - 0.8468 84.68%
CYP3A4 substrate + 0.5909 59.09%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8639 86.39%
CYP3A4 inhibition - 0.8798 87.98%
CYP2C9 inhibition - 0.9239 92.39%
CYP2C19 inhibition - 0.9061 90.61%
CYP2D6 inhibition - 0.9244 92.44%
CYP1A2 inhibition - 0.7540 75.40%
CYP2C8 inhibition + 0.5934 59.34%
CYP inhibitory promiscuity - 0.7550 75.50%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.7039 70.39%
Eye corrosion - 0.9882 98.82%
Eye irritation - 0.8356 83.56%
Skin irritation - 0.8089 80.89%
Skin corrosion - 0.9618 96.18%
Ames mutagenesis + 0.5500 55.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5000 50.00%
Micronuclear + 0.6233 62.33%
Hepatotoxicity - 0.7257 72.57%
skin sensitisation - 0.9167 91.67%
Respiratory toxicity - 0.5889 58.89%
Reproductive toxicity + 0.7667 76.67%
Mitochondrial toxicity + 0.5250 52.50%
Nephrotoxicity - 0.7710 77.10%
Acute Oral Toxicity (c) III 0.7077 70.77%
Estrogen receptor binding + 0.6357 63.57%
Androgen receptor binding - 0.5522 55.22%
Thyroid receptor binding - 0.5339 53.39%
Glucocorticoid receptor binding + 0.6522 65.22%
Aromatase binding + 0.5731 57.31%
PPAR gamma + 0.5371 53.71%
Honey bee toxicity - 0.8287 82.87%
Biodegradation - 0.6750 67.50%
Crustacea aquatic toxicity - 0.7600 76.00%
Fish aquatic toxicity + 0.6972 69.72%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.67% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.47% 96.09%
CHEMBL2581 P07339 Cathepsin D 93.95% 98.95%
CHEMBL3401 O75469 Pregnane X receptor 93.10% 94.73%
CHEMBL3060 Q9Y345 Glycine transporter 2 90.16% 99.17%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 87.36% 94.00%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 86.92% 95.50%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 86.17% 96.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 86.01% 86.33%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 85.50% 95.56%
CHEMBL1806 P11388 DNA topoisomerase II alpha 82.79% 89.00%
CHEMBL2535 P11166 Glucose transporter 80.69% 98.75%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Rubia yunnanensis

Cross-Links

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PubChem 56600470
NPASS NPC165822
LOTUS LTS0158594
wikiData Q27137853