rubiarbonone B

Details

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Internal ID 6fd2b515-5f8d-4478-9a9f-962d2ada9329
Taxonomy Lipids and lipid-like molecules > Prenol lipids > Triterpenoids
IUPAC Name (1R,3S,3aR,5aS,5bS,6S,7aR,11aS,13aR,13bR)-1,6-dihydroxy-3a-(hydroxymethyl)-5a,8,8,11a,13a-pentamethyl-3-propan-2-yl-2,3,4,5,5b,6,7,7a,10,11,13,13b-dodecahydro-1H-cyclopenta[a]chrysen-9-one
SMILES (Canonical) CC(C)C1CC(C2C1(CCC3(C2(CC=C4C3C(CC5C4(CCC(=O)C5(C)C)C)O)C)C)CO)O
SMILES (Isomeric) CC(C)[C@@H]1C[C@H]([C@H]2[C@]1(CC[C@@]3([C@@]2(CC=C4[C@H]3[C@H](C[C@@H]5[C@@]4(CCC(=O)C5(C)C)C)O)C)C)CO)O
InChI InChI=1S/C30H48O4/c1-17(2)19-14-21(33)25-29(7)11-8-18-24(28(29,6)12-13-30(19,25)16-31)20(32)15-22-26(3,4)23(34)9-10-27(18,22)5/h8,17,19-22,24-25,31-33H,9-16H2,1-7H3/t19-,20-,21+,22-,24-,25+,27+,28-,29+,30+/m0/s1
InChI Key BNCWPGHWXAEYNK-MEKJSECDSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C30H48O4
Molecular Weight 472.70 g/mol
Exact Mass 472.35526001 g/mol
Topological Polar Surface Area (TPSA) 77.80 Ų
XlogP 4.60
Atomic LogP (AlogP) 5.15
H-Bond Acceptor 4
H-Bond Donor 3
Rotatable Bonds 2

Synonyms

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CHEBI:69526
CHEMBL511777
Q27137866
(1R,3S,3aR,5aS,5bS,6S,7aR,11aS,13aR,13bR)-1,6-dihydroxy-3a-(hydroxymethyl)-5a,8,8,11a,13a-pentamethyl-3-(propan-2-yl)-1,2,3,3a,4,5,5a,5b,6,7,7a,8,10,11,11a,13,13a,13b-octadecahydro-9H-cyclopenta[a]chrysen-9-one

2D Structure

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2D Structure of rubiarbonone B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9963 99.63%
Caco-2 - 0.6053 60.53%
Blood Brain Barrier + 0.5385 53.85%
Human oral bioavailability - 0.6429 64.29%
Subcellular localzation Mitochondria 0.8382 83.82%
OATP2B1 inhibitior - 0.8576 85.76%
OATP1B1 inhibitior + 0.8868 88.68%
OATP1B3 inhibitior + 0.9347 93.47%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior + 0.6894 68.94%
BSEP inhibitior + 0.6642 66.42%
P-glycoprotein inhibitior - 0.6986 69.86%
P-glycoprotein substrate - 0.5959 59.59%
CYP3A4 substrate + 0.6500 65.00%
CYP2C9 substrate - 0.8407 84.07%
CYP2D6 substrate - 0.7921 79.21%
CYP3A4 inhibition - 0.8174 81.74%
CYP2C9 inhibition - 0.8943 89.43%
CYP2C19 inhibition - 0.9544 95.44%
CYP2D6 inhibition - 0.9408 94.08%
CYP1A2 inhibition - 0.9386 93.86%
CYP2C8 inhibition - 0.5918 59.18%
CYP inhibitory promiscuity - 0.7972 79.72%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.9700 97.00%
Carcinogenicity (trinary) Non-required 0.6911 69.11%
Eye corrosion - 0.9941 99.41%
Eye irritation - 0.9441 94.41%
Skin irritation + 0.5430 54.30%
Skin corrosion - 0.9665 96.65%
Ames mutagenesis - 0.6154 61.54%
Human Ether-a-go-go-Related Gene inhibition - 0.5373 53.73%
Micronuclear - 0.9000 90.00%
Hepatotoxicity - 0.6933 69.33%
skin sensitisation - 0.8135 81.35%
Respiratory toxicity + 0.6444 64.44%
Reproductive toxicity + 0.9778 97.78%
Mitochondrial toxicity + 0.8625 86.25%
Nephrotoxicity - 0.7764 77.64%
Acute Oral Toxicity (c) III 0.8027 80.27%
Estrogen receptor binding + 0.7178 71.78%
Androgen receptor binding + 0.7458 74.58%
Thyroid receptor binding + 0.6446 64.46%
Glucocorticoid receptor binding + 0.7933 79.33%
Aromatase binding + 0.7097 70.97%
PPAR gamma + 0.5274 52.74%
Honey bee toxicity - 0.7829 78.29%
Biodegradation - 0.8250 82.50%
Crustacea aquatic toxicity - 0.7500 75.00%
Fish aquatic toxicity + 0.9877 98.77%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 95.56% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.71% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 93.61% 96.09%
CHEMBL2996 Q05655 Protein kinase C delta 92.94% 97.79%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 92.09% 95.56%
CHEMBL1937 Q92769 Histone deacetylase 2 92.00% 94.75%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 91.83% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 88.60% 97.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 88.34% 100.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 88.12% 97.25%
CHEMBL1914 P06276 Butyrylcholinesterase 88.06% 95.00%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 85.19% 82.69%
CHEMBL1907598 P05106 Integrin alpha-V/beta-3 85.05% 95.71%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 84.66% 90.71%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 84.46% 99.23%
CHEMBL226 P30542 Adenosine A1 receptor 81.79% 95.93%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 81.06% 96.95%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Rubia yunnanensis

Cross-Links

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PubChem 44566782
NPASS NPC190554
LOTUS LTS0100289
wikiData Q27137866