Rubiadinprimeveroside

Details

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Internal ID d46049c4-b4a6-484f-b2ec-edcfd37c878a
Taxonomy Benzenoids > Anthracenes > Anthraquinones
IUPAC Name 1-hydroxy-2-methyl-3-[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-[[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxymethyl]oxan-2-yl]oxyanthracene-9,10-dione
SMILES (Canonical) CC1=C(C=C2C(=C1O)C(=O)C3=CC=CC=C3C2=O)OC4C(C(C(C(O4)COC5C(C(C(CO5)O)O)O)O)O)O
SMILES (Isomeric) CC1=C(C=C2C(=C1O)C(=O)C3=CC=CC=C3C2=O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO[C@H]5[C@@H]([C@H]([C@@H](CO5)O)O)O)O)O)O
InChI InChI=1S/C26H28O13/c1-9-14(6-12-16(17(9)28)19(30)11-5-3-2-4-10(11)18(12)29)38-26-24(35)22(33)21(32)15(39-26)8-37-25-23(34)20(31)13(27)7-36-25/h2-6,13,15,20-28,31-35H,7-8H2,1H3/t13-,15-,20+,21-,22+,23-,24-,25+,26-/m1/s1
InChI Key MICKPSHQKPCYJH-WFLOGZPDSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C26H28O13
Molecular Weight 548.50 g/mol
Exact Mass 548.15299094 g/mol
Topological Polar Surface Area (TPSA) 213.00 Ų
XlogP -0.80
Atomic LogP (AlogP) -1.88
H-Bond Acceptor 13
H-Bond Donor 7
Rotatable Bonds 5

Synonyms

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Rubiadin-primveroside
BRN 0071982
26388-47-6
CHEMBL5220958
4-17-00-03463 (Beilstein Handbook Reference)
1-Hydroxy-2-methyl-3-((6-O-beta,D-xylopyranosyl-beta-D-glucopyranosyl)oxy)-9,10-anthracenedione
beta-D-4-Hydroxy-3-methyl-2-anthraquinonyl 6-O-beta-D-xylopyranosylglucopyranoside
Glucopyranoside, 4-hydroxy-3-methyl-2-anthraquinonyl 6-O-beta-D-xylopyranosyl-, beta-D-
9,10-Anthracenedione, 1-hydroxy-2-methyl-3-((6-O-beta,D-xylopyranosyl-beta-D-glucopyranosyl)oxy)-
DTXSID90949277
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Rubiadinprimeveroside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.6161 61.61%
Caco-2 - 0.8967 89.67%
Blood Brain Barrier - 0.6500 65.00%
Human oral bioavailability - 0.7000 70.00%
Subcellular localzation Mitochondria 0.6071 60.71%
OATP2B1 inhibitior - 0.8459 84.59%
OATP1B1 inhibitior + 0.8641 86.41%
OATP1B3 inhibitior + 0.9548 95.48%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.7167 71.67%
P-glycoprotein inhibitior - 0.6628 66.28%
P-glycoprotein substrate - 0.6826 68.26%
CYP3A4 substrate + 0.6344 63.44%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8559 85.59%
CYP3A4 inhibition - 0.9401 94.01%
CYP2C9 inhibition - 0.9501 95.01%
CYP2C19 inhibition - 0.9203 92.03%
CYP2D6 inhibition - 0.9407 94.07%
CYP1A2 inhibition - 0.8602 86.02%
CYP2C8 inhibition - 0.6152 61.52%
CYP inhibitory promiscuity - 0.9545 95.45%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6810 68.10%
Eye corrosion - 0.9930 99.30%
Eye irritation - 0.9319 93.19%
Skin irritation - 0.8528 85.28%
Skin corrosion - 0.9598 95.98%
Ames mutagenesis + 0.9100 91.00%
Human Ether-a-go-go-Related Gene inhibition + 0.6837 68.37%
Micronuclear + 0.5274 52.74%
Hepatotoxicity - 0.7099 70.99%
skin sensitisation - 0.8989 89.89%
Respiratory toxicity + 0.5889 58.89%
Reproductive toxicity + 0.8778 87.78%
Mitochondrial toxicity + 0.7125 71.25%
Nephrotoxicity - 0.9135 91.35%
Acute Oral Toxicity (c) III 0.6200 62.00%
Estrogen receptor binding + 0.8142 81.42%
Androgen receptor binding - 0.5242 52.42%
Thyroid receptor binding - 0.5145 51.45%
Glucocorticoid receptor binding - 0.4937 49.37%
Aromatase binding + 0.6402 64.02%
PPAR gamma + 0.7077 70.77%
Honey bee toxicity - 0.8511 85.11%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.6000 60.00%
Fish aquatic toxicity + 0.9104 91.04%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 98.89% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.33% 91.11%
CHEMBL1951 P21397 Monoamine oxidase A 96.92% 91.49%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 96.77% 95.56%
CHEMBL1806 P11388 DNA topoisomerase II alpha 96.16% 89.00%
CHEMBL226 P30542 Adenosine A1 receptor 91.77% 95.93%
CHEMBL3401 O75469 Pregnane X receptor 91.51% 94.73%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.37% 96.09%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 89.79% 94.00%
CHEMBL220 P22303 Acetylcholinesterase 89.64% 94.45%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.92% 86.33%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 87.11% 99.23%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 86.88% 95.83%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 85.99% 96.00%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 85.43% 89.62%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.63% 95.89%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 83.93% 96.21%
CHEMBL2378 P30307 Dual specificity phosphatase Cdc25C 83.68% 96.67%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.67% 97.09%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 82.20% 97.21%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 81.44% 99.15%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Ophiorrhiza hayatana
Rhynchotechum vestitum
Rubia wallichiana

Cross-Links

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PubChem 213463
LOTUS LTS0272246
wikiData Q82927158