Rhodostreptomycin B

Details

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Internal ID 67947754-407f-42f4-966d-aff9678efb8c
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Aminosaccharides > Aminoglycosides > Aminocyclitol glycosides
IUPAC Name 2-[(1R,2R,3S,4R,5R,6S)-3-(diaminomethylideneamino)-4-[[(4R,5R,6R,8R,9R)-9-[(2S,3S,4S,5R,6S)-4,5-dihydroxy-6-(hydroxymethyl)-3-(methylamino)oxan-2-yl]oxy-4-hydroxy-6-methyl-2-oxo-1,7-dioxa-3-azaspiro[4.4]nonan-8-yl]oxy]-2,5,6-trihydroxycyclohexyl]guanidine
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C22H40N8O13/c1-4-22(18(37)30-21(38)43-22)15(42-16-8(27-2)12(35)9(32)5(3-31)40-16)17(39-4)41-14-7(29-20(25)26)10(33)6(28-19(23)24)11(34)13(14)36/h4-18,27,31-37H,3H2,1-2H3,(H,30,38)(H4,23,24,28)(H4,25,26,29)/t4-,5+,6-,7+,8+,9+,10-,11+,12+,13-,14-,15+,16+,17+,18-,22-/m1/s1
InChI Key DGVZNVLARKDWED-SWFKCVFYSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C22H40N8O13
Molecular Weight 624.60 g/mol
Exact Mass 624.27148336 g/mol
Topological Polar Surface Area (TPSA) 358.00 Ų
XlogP -7.80
Atomic LogP (AlogP) -8.29
H-Bond Acceptor 16
H-Bond Donor 13
Rotatable Bonds 8

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of Rhodostreptomycin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8923 89.23%
Caco-2 - 0.8660 86.60%
Blood Brain Barrier - 0.8750 87.50%
Human oral bioavailability - 0.8286 82.86%
Subcellular localzation Lysosomes 0.4932 49.32%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8860 88.60%
OATP1B3 inhibitior + 0.9457 94.57%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.7584 75.84%
P-glycoprotein inhibitior - 0.6967 69.67%
P-glycoprotein substrate + 0.5189 51.89%
CYP3A4 substrate + 0.6483 64.83%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8226 82.26%
CYP3A4 inhibition - 0.9686 96.86%
CYP2C9 inhibition - 0.8914 89.14%
CYP2C19 inhibition - 0.8681 86.81%
CYP2D6 inhibition - 0.9144 91.44%
CYP1A2 inhibition - 0.8405 84.05%
CYP2C8 inhibition - 0.6324 63.24%
CYP inhibitory promiscuity - 0.9528 95.28%
UGT catelyzed - 0.6000 60.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.5973 59.73%
Eye corrosion - 0.9851 98.51%
Eye irritation - 0.9300 93.00%
Skin irritation - 0.7828 78.28%
Skin corrosion - 0.9291 92.91%
Ames mutagenesis + 0.7046 70.46%
Human Ether-a-go-go-Related Gene inhibition - 0.4848 48.48%
Micronuclear + 0.8600 86.00%
Hepatotoxicity - 0.6592 65.92%
skin sensitisation + 0.5924 59.24%
Respiratory toxicity + 0.7778 77.78%
Reproductive toxicity + 0.9000 90.00%
Mitochondrial toxicity + 0.8750 87.50%
Nephrotoxicity + 0.6556 65.56%
Acute Oral Toxicity (c) III 0.5726 57.26%
Estrogen receptor binding + 0.6281 62.81%
Androgen receptor binding - 0.5413 54.13%
Thyroid receptor binding + 0.5726 57.26%
Glucocorticoid receptor binding + 0.5590 55.90%
Aromatase binding + 0.6691 66.91%
PPAR gamma + 0.6275 62.75%
Honey bee toxicity - 0.6419 64.19%
Biodegradation - 0.6750 67.50%
Crustacea aquatic toxicity - 0.6700 67.00%
Fish aquatic toxicity - 0.8883 88.83%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.06% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.89% 96.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.17% 94.45%
CHEMBL299 P17252 Protein kinase C alpha 93.11% 98.03%
CHEMBL3137262 O60341 LSD1/CoREST complex 92.16% 97.09%
CHEMBL2581 P07339 Cathepsin D 91.62% 98.95%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 91.06% 96.21%
CHEMBL218 P21554 Cannabinoid CB1 receptor 89.82% 96.61%
CHEMBL2996 Q05655 Protein kinase C delta 86.26% 97.79%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 86.20% 94.33%
CHEMBL3401 O75469 Pregnane X receptor 85.19% 94.73%
CHEMBL3476 O15111 Inhibitor of nuclear factor kappa B kinase alpha subunit 84.69% 95.83%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.16% 95.89%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 84.02% 89.34%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.78% 94.00%
CHEMBL6136 O60341 Lysine-specific histone demethylase 1 83.73% 95.58%
CHEMBL1907605 P24864 Cyclin-dependent kinase 2/cyclin E1 82.67% 92.88%
CHEMBL3286 P00749 Urokinase-type plasminogen activator 82.57% 97.88%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 82.51% 95.56%
CHEMBL1991 O14920 Inhibitor of nuclear factor kappa B kinase beta subunit 81.63% 97.15%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 139586199
LOTUS LTS0141349
wikiData Q77501149