Rhodatin

Details

Top
Internal ID 25c2bd09-fde1-487a-a663-81ebea4562bd
Taxonomy Organoheterocyclic compounds > Benzopyrans > 1-benzopyrans > Xanthenes
IUPAC Name (1R,4R,5S,8R,9S)-11,18-dihydroxy-16-(hydroxymethyl)-4,8,12-trimethyl-2,21-dioxapentacyclo[11.8.0.01,9.05,9.015,20]henicosa-11,13,15,17,19-pentaen-10-one
SMILES (Canonical) CC1CCC2C13C(=O)C(=C(C4=CC5=C(C=C(C=C5OC34OCC2C)O)CO)C)O
SMILES (Isomeric) C[C@@H]1CC[C@@H]2[C@]13C(=O)C(=C(C4=CC5=C(C=C(C=C5O[C@@]34OC[C@@H]2C)O)CO)C)O
InChI InChI=1S/C23H26O6/c1-11-10-28-23-18(8-16-14(9-24)6-15(25)7-19(16)29-23)13(3)20(26)21(27)22(23)12(2)4-5-17(11)22/h6-8,11-12,17,24-26H,4-5,9-10H2,1-3H3/t11-,12+,17-,22-,23+/m0/s1
InChI Key PCFXNYBHUVSXEK-ZABCOECVSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

Top
Molecular Formula C23H26O6
Molecular Weight 398.40 g/mol
Exact Mass 398.17293854 g/mol
Topological Polar Surface Area (TPSA) 96.20 Ų
XlogP 2.50
Atomic LogP (AlogP) 3.47
H-Bond Acceptor 6
H-Bond Donor 3
Rotatable Bonds 1

Synonyms

Top
There are no found synonyms.

2D Structure

Top
2D Structure of Rhodatin

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9477 94.77%
Caco-2 + 0.6165 61.65%
Blood Brain Barrier + 0.6250 62.50%
Human oral bioavailability - 0.5571 55.71%
Subcellular localzation Mitochondria 0.8090 80.90%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8526 85.26%
OATP1B3 inhibitior + 0.9249 92.49%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.6250 62.50%
BSEP inhibitior + 0.6784 67.84%
P-glycoprotein inhibitior - 0.6050 60.50%
P-glycoprotein substrate - 0.5681 56.81%
CYP3A4 substrate + 0.6891 68.91%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8641 86.41%
CYP3A4 inhibition - 0.8158 81.58%
CYP2C9 inhibition - 0.8169 81.69%
CYP2C19 inhibition - 0.7653 76.53%
CYP2D6 inhibition - 0.8801 88.01%
CYP1A2 inhibition - 0.5193 51.93%
CYP2C8 inhibition + 0.5464 54.64%
CYP inhibitory promiscuity - 0.6953 69.53%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.5079 50.79%
Eye corrosion - 0.9911 99.11%
Eye irritation - 0.9391 93.91%
Skin irritation - 0.6028 60.28%
Skin corrosion - 0.9494 94.94%
Ames mutagenesis - 0.5270 52.70%
Human Ether-a-go-go-Related Gene inhibition - 0.4715 47.15%
Micronuclear - 0.8200 82.00%
Hepatotoxicity - 0.5101 51.01%
skin sensitisation - 0.8618 86.18%
Respiratory toxicity + 0.7222 72.22%
Reproductive toxicity + 0.8222 82.22%
Mitochondrial toxicity + 0.6625 66.25%
Nephrotoxicity - 0.7349 73.49%
Acute Oral Toxicity (c) III 0.4263 42.63%
Estrogen receptor binding + 0.8700 87.00%
Androgen receptor binding + 0.6950 69.50%
Thyroid receptor binding + 0.6432 64.32%
Glucocorticoid receptor binding + 0.8126 81.26%
Aromatase binding + 0.7826 78.26%
PPAR gamma + 0.7016 70.16%
Honey bee toxicity - 0.8021 80.21%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity + 0.5200 52.00%
Fish aquatic toxicity + 0.9938 99.38%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.35% 91.11%
CHEMBL2581 P07339 Cathepsin D 97.51% 98.95%
CHEMBL4481 P35228 Nitric oxide synthase, inducible 94.68% 94.80%
CHEMBL1806 P11388 DNA topoisomerase II alpha 92.79% 89.00%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 92.54% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.95% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.11% 97.09%
CHEMBL1994 P08235 Mineralocorticoid receptor 89.12% 100.00%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 86.22% 95.89%
CHEMBL226 P30542 Adenosine A1 receptor 84.75% 95.93%
CHEMBL1871 P10275 Androgen Receptor 84.24% 96.43%
CHEMBL2553 Q15418 Ribosomal protein S6 kinase alpha 1 82.99% 85.11%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 82.59% 99.23%
CHEMBL4478 Q00975 Voltage-gated N-type calcium channel alpha-1B subunit 82.19% 97.14%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 81.72% 90.71%
CHEMBL3192 Q9BY41 Histone deacetylase 8 81.58% 93.99%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 80.89% 92.62%
CHEMBL2288 Q13526 Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 80.55% 91.71%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 80.10% 94.45%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 80.02% 99.15%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 146683189
LOTUS LTS0192117
wikiData Q105205702