Petunidin 3-sambubioside

Details

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Internal ID 12c235d0-9200-4391-ae6a-4a6c4d7aad40
Taxonomy Phenylpropanoids and polyketides > Flavonoids > Flavonoid glycosides > Anthocyanins > Anthocyanidin-3-O-glycosides
IUPAC Name (2S,4S,5R)-2-[(2S,4S,5S)-2-[2-(3,4-dihydroxy-5-methoxyphenyl)-5,7-dihydroxychromenylium-3-yl]oxy-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl]oxyoxane-3,4,5-triol
SMILES (Canonical) COC1=CC(=CC(=C1O)O)C2=[O+]C3=CC(=CC(=C3C=C2OC4C(C(C(C(O4)CO)O)O)OC5C(C(C(CO5)O)O)O)O)O
SMILES (Isomeric) COC1=CC(=CC(=C1O)O)C2=[O+]C3=CC(=CC(=C3C=C2O[C@H]4C([C@H]([C@@H](C(O4)CO)O)O)O[C@H]5C([C@H]([C@@H](CO5)O)O)O)O)O
InChI InChI=1S/C27H30O16/c1-38-16-3-9(2-13(31)19(16)33)24-17(6-11-12(30)4-10(29)5-15(11)40-24)41-27-25(22(36)21(35)18(7-28)42-27)43-26-23(37)20(34)14(32)8-39-26/h2-6,14,18,20-23,25-28,32,34-37H,7-8H2,1H3,(H3-,29,30,31,33)/p+1/t14-,18?,20+,21-,22+,23?,25?,26+,27-/m1/s1
InChI Key GUVCTUQWASBOTK-DHWVSNTBSA-O
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C27H31O16+
Molecular Weight 611.50 g/mol
Exact Mass 611.16120990 g/mol
Topological Polar Surface Area (TPSA) 249.00 Ų
XlogP 0.00
Atomic LogP (AlogP) -1.15
H-Bond Acceptor 15
H-Bond Donor 10
Rotatable Bonds 7

Synonyms

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Petunidin 3-(2-xylosylglucoside)
Petunidin 3-O-beta-D-sambubioside
LMPK12010363

2D Structure

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2D Structure of Petunidin 3-sambubioside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.7956 79.56%
Caco-2 - 0.9107 91.07%
Blood Brain Barrier - 0.6250 62.50%
Human oral bioavailability - 0.7857 78.57%
Subcellular localzation Nucleus 0.4885 48.85%
OATP2B1 inhibitior - 0.5762 57.62%
OATP1B1 inhibitior + 0.8638 86.38%
OATP1B3 inhibitior + 0.9683 96.83%
MATE1 inhibitior - 0.8400 84.00%
OCT2 inhibitior - 0.8250 82.50%
BSEP inhibitior + 0.5835 58.35%
P-glycoprotein inhibitior - 0.5635 56.35%
P-glycoprotein substrate + 0.5376 53.76%
CYP3A4 substrate + 0.6657 66.57%
CYP2C9 substrate - 0.8057 80.57%
CYP2D6 substrate - 0.8169 81.69%
CYP3A4 inhibition - 0.9678 96.78%
CYP2C9 inhibition - 0.9301 93.01%
CYP2C19 inhibition - 0.8814 88.14%
CYP2D6 inhibition - 0.9094 90.94%
CYP1A2 inhibition - 0.8937 89.37%
CYP2C8 inhibition + 0.7489 74.89%
CYP inhibitory promiscuity - 0.8682 86.82%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.6125 61.25%
Eye corrosion - 0.9909 99.09%
Eye irritation - 0.9138 91.38%
Skin irritation - 0.8181 81.81%
Skin corrosion - 0.9526 95.26%
Ames mutagenesis - 0.5554 55.54%
Human Ether-a-go-go-Related Gene inhibition + 0.7059 70.59%
Micronuclear + 0.6359 63.59%
Hepatotoxicity - 0.7177 71.77%
skin sensitisation - 0.9180 91.80%
Respiratory toxicity + 0.6333 63.33%
Reproductive toxicity + 0.7111 71.11%
Mitochondrial toxicity + 0.5375 53.75%
Nephrotoxicity - 0.9525 95.25%
Acute Oral Toxicity (c) III 0.6944 69.44%
Estrogen receptor binding + 0.8361 83.61%
Androgen receptor binding + 0.5530 55.30%
Thyroid receptor binding + 0.5857 58.57%
Glucocorticoid receptor binding + 0.6019 60.19%
Aromatase binding + 0.7057 70.57%
PPAR gamma + 0.7490 74.90%
Honey bee toxicity - 0.7458 74.58%
Biodegradation - 0.6500 65.00%
Crustacea aquatic toxicity - 0.6000 60.00%
Fish aquatic toxicity - 0.5053 50.53%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.69% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.96% 96.09%
CHEMBL241 Q14432 Phosphodiesterase 3A 95.98% 92.94%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 95.73% 94.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 93.11% 89.00%
CHEMBL1937 Q92769 Histone deacetylase 2 91.40% 94.75%
CHEMBL3714130 P46095 G-protein coupled receptor 6 90.86% 97.36%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 88.87% 92.62%
CHEMBL1951 P21397 Monoamine oxidase A 88.60% 91.49%
CHEMBL2581 P07339 Cathepsin D 88.29% 98.95%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.79% 99.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 87.57% 97.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 87.36% 86.33%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 87.30% 89.62%
CHEMBL215 P09917 Arachidonate 5-lipoxygenase 86.34% 92.68%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 86.31% 96.00%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 86.12% 85.14%
CHEMBL4208 P20618 Proteasome component C5 85.31% 90.00%
CHEMBL5608 Q16288 NT-3 growth factor receptor 84.29% 95.89%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 83.85% 95.56%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 83.08% 99.15%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Apium graveolens
Bupleurum chinense
Medicago sativa
Vitis vinifera

Cross-Links

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PubChem 44256968
NPASS NPC288241
LOTUS LTS0203641
wikiData Q105020603