Periplogenin glucoside

Details

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Internal ID eefe94d8-68f8-4a1f-aef4-5fe0e0987490
Taxonomy Lipids and lipid-like molecules > Steroids and steroid derivatives > Steroid lactones > Cardenolides and derivatives > Cardenolide glycosides and derivatives
IUPAC Name 3-[(3S,5S,8R,9S,10R,13R,14S,17R)-5,14-dihydroxy-10,13-dimethyl-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2,3,4,6,7,8,9,11,12,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2H-furan-5-one
SMILES (Canonical) CC12CCC(CC1(CCC3C2CCC4(C3(CCC4C5=CC(=O)OC5)O)C)O)OC6C(C(C(C(O6)CO)O)O)O
SMILES (Isomeric) C[C@]12CC[C@@H](C[C@]1(CC[C@@H]3[C@@H]2CC[C@]4([C@@]3(CC[C@@H]4C5=CC(=O)OC5)O)C)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O
InChI InChI=1S/C29H44O10/c1-26-7-3-16(38-25-24(34)23(33)22(32)20(13-30)39-25)12-28(26,35)9-5-19-18(26)4-8-27(2)17(6-10-29(19,27)36)15-11-21(31)37-14-15/h11,16-20,22-25,30,32-36H,3-10,12-14H2,1-2H3/t16-,17+,18-,19+,20+,22+,23-,24+,25+,26+,27+,28-,29-/m0/s1
InChI Key FECZMYDDHKVQIA-CZGJECLASA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C29H44O10
Molecular Weight 552.70 g/mol
Exact Mass 552.29344760 g/mol
Topological Polar Surface Area (TPSA) 166.00 Ų
XlogP -0.40
Atomic LogP (AlogP) 0.54
H-Bond Acceptor 10
H-Bond Donor 6
Rotatable Bonds 4

Synonyms

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CHEMBL462439

2D Structure

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2D Structure of Periplogenin glucoside

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8248 82.48%
Caco-2 - 0.8700 87.00%
Blood Brain Barrier - 0.6750 67.50%
Human oral bioavailability - 0.8143 81.43%
Subcellular localzation Mitochondria 0.8382 83.82%
OATP2B1 inhibitior - 0.6101 61.01%
OATP1B1 inhibitior + 0.9313 93.13%
OATP1B3 inhibitior + 0.9481 94.81%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.6975 69.75%
P-glycoprotein inhibitior - 0.5160 51.60%
P-glycoprotein substrate - 0.5820 58.20%
CYP3A4 substrate + 0.6814 68.14%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.9010 90.10%
CYP3A4 inhibition - 0.9241 92.41%
CYP2C9 inhibition - 0.9242 92.42%
CYP2C19 inhibition - 0.9271 92.71%
CYP2D6 inhibition - 0.9231 92.31%
CYP1A2 inhibition - 0.9045 90.45%
CYP2C8 inhibition - 0.6770 67.70%
CYP inhibitory promiscuity - 0.9179 91.79%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.6086 60.86%
Eye corrosion - 0.9907 99.07%
Eye irritation - 0.9412 94.12%
Skin irritation - 0.5648 56.48%
Skin corrosion - 0.9423 94.23%
Ames mutagenesis - 0.7370 73.70%
Human Ether-a-go-go-Related Gene inhibition + 0.8799 87.99%
Micronuclear - 0.8600 86.00%
Hepatotoxicity - 0.7677 76.77%
skin sensitisation - 0.9189 91.89%
Respiratory toxicity + 0.8556 85.56%
Reproductive toxicity + 0.8889 88.89%
Mitochondrial toxicity + 0.5125 51.25%
Nephrotoxicity - 0.8225 82.25%
Acute Oral Toxicity (c) I 0.8357 83.57%
Estrogen receptor binding + 0.7926 79.26%
Androgen receptor binding + 0.8242 82.42%
Thyroid receptor binding - 0.6029 60.29%
Glucocorticoid receptor binding + 0.5785 57.85%
Aromatase binding + 0.6943 69.43%
PPAR gamma - 0.5000 50.00%
Honey bee toxicity - 0.7717 77.17%
Biodegradation - 0.6500 65.00%
Crustacea aquatic toxicity - 0.5900 59.00%
Fish aquatic toxicity + 0.9498 94.98%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.59% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.00% 96.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 95.92% 97.25%
CHEMBL3137262 O60341 LSD1/CoREST complex 95.23% 97.09%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 95.08% 94.45%
CHEMBL1994 P08235 Mineralocorticoid receptor 94.75% 100.00%
CHEMBL226 P30542 Adenosine A1 receptor 93.21% 95.93%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 90.89% 85.14%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.77% 86.33%
CHEMBL5608 Q16288 NT-3 growth factor receptor 88.92% 95.89%
CHEMBL2581 P07339 Cathepsin D 88.45% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.19% 95.56%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 86.81% 96.77%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 86.80% 96.21%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 83.41% 94.00%
CHEMBL3351 Q13085 Acetyl-CoA carboxylase 1 81.80% 93.04%
CHEMBL4208 P20618 Proteasome component C5 81.78% 90.00%
CHEMBL5255 O00206 Toll-like receptor 4 81.68% 92.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Periploca graeca
Speirantha gardenii
Streptocaulon juventas

Cross-Links

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PubChem 14284305
NPASS NPC84987
ChEMBL CHEMBL462439
LOTUS LTS0034555
wikiData Q104993922