(4S,5S)-4,5-Dihydroxy-5-(hydroxymethyl)-2-cyclopenten-1-one

Details

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Internal ID c7390112-1f85-469b-b9bb-455031d235d1
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbonyl compounds > Acyloins
IUPAC Name (4S,5S)-4,5-dihydroxy-5-(hydroxymethyl)cyclopent-2-en-1-one
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C6H8O4/c7-3-6(10)4(8)1-2-5(6)9/h1-2,4,7-8,10H,3H2/t4-,6-/m0/s1
InChI Key NCKMZWFKQTWDTD-NJGYIYPDSA-N
Popularity 9 references in papers

Physical and Chemical Properties

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Molecular Formula C6H8O4
Molecular Weight 144.12 g/mol
Exact Mass 144.04225873 g/mol
Topological Polar Surface Area (TPSA) 77.80 Ų
XlogP -1.40
Atomic LogP (AlogP) -1.79
H-Bond Acceptor 4
H-Bond Donor 3
Rotatable Bonds 1

Synonyms

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Antibiotic XB 94
Antibiotic C 2554B
49644-25-9
XB 94
Epi pentenomycin I
(4S-cis)-4,5-Dihydroxy-5-(hydroxymethyl)cyclopenten-1-one
DZ2G6KA8RT
(-)-PENTENOMYCIN I
PENTENOMYCIN I, (-)-
SCHEMBL13507742
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of (4S,5S)-4,5-Dihydroxy-5-(hydroxymethyl)-2-cyclopenten-1-one

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8594 85.94%
Caco-2 - 0.7063 70.63%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Mitochondria 0.7129 71.29%
OATP2B1 inhibitior - 0.8580 85.80%
OATP1B1 inhibitior + 0.9494 94.94%
OATP1B3 inhibitior + 0.9604 96.04%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9588 95.88%
BSEP inhibitior - 0.9381 93.81%
P-glycoprotein inhibitior - 0.9846 98.46%
P-glycoprotein substrate - 0.9631 96.31%
CYP3A4 substrate - 0.6196 61.96%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8693 86.93%
CYP3A4 inhibition - 0.9366 93.66%
CYP2C9 inhibition - 0.9477 94.77%
CYP2C19 inhibition - 0.9323 93.23%
CYP2D6 inhibition - 0.9471 94.71%
CYP1A2 inhibition - 0.8443 84.43%
CYP2C8 inhibition - 0.9870 98.70%
CYP inhibitory promiscuity - 0.9734 97.34%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.6941 69.41%
Eye corrosion - 0.9859 98.59%
Eye irritation + 0.8625 86.25%
Skin irritation - 0.6636 66.36%
Skin corrosion - 0.8981 89.81%
Ames mutagenesis - 0.6900 69.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8956 89.56%
Micronuclear - 0.7241 72.41%
Hepatotoxicity + 0.5460 54.60%
skin sensitisation - 0.7041 70.41%
Respiratory toxicity - 0.5556 55.56%
Reproductive toxicity + 0.6889 68.89%
Mitochondrial toxicity - 0.6750 67.50%
Nephrotoxicity + 0.6078 60.78%
Acute Oral Toxicity (c) III 0.5298 52.98%
Estrogen receptor binding - 0.9047 90.47%
Androgen receptor binding - 0.7795 77.95%
Thyroid receptor binding - 0.7245 72.45%
Glucocorticoid receptor binding - 0.6955 69.55%
Aromatase binding - 0.8439 84.39%
PPAR gamma - 0.7397 73.97%
Honey bee toxicity - 0.9354 93.54%
Biodegradation + 0.5750 57.50%
Crustacea aquatic toxicity - 0.7000 70.00%
Fish aquatic toxicity - 0.8015 80.15%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.58% 91.11%
CHEMBL2581 P07339 Cathepsin D 85.90% 98.95%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 84.61% 95.56%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 82.85% 96.09%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 162082
LOTUS LTS0240839
wikiData Q83070699