Pandaroside B

Details

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Internal ID a6f4e2e4-a9dd-4066-a5eb-20532b99d35a
Taxonomy Lipids and lipid-like molecules > Steroids and steroid derivatives > Steroidal glycosides > Steroid glucuronide conjugates
IUPAC Name (2S,3S,4S,5R,6R)-6-[[(3S,5S,8R,9S,10S,13S,14R)-17-[(2R,5R)-5-ethyl-6-methyl-4-oxoheptan-2-yl]-16-hydroxy-10,13-dimethyl-15-oxo-1,2,3,4,5,6,7,8,9,11,12,14-dodecahydrocyclopenta[a]phenanthren-3-yl]oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C35H54O10/c1-7-20(16(2)3)23(36)14-17(4)24-26(37)27(38)25-21-9-8-18-15-19(10-12-34(18,5)22(21)11-13-35(24,25)6)44-33-30(41)28(39)29(40)31(45-33)32(42)43/h16-22,25,28-31,33,37,39-41H,7-15H2,1-6H3,(H,42,43)/t17-,18+,19+,20-,21-,22+,25+,28+,29+,30-,31+,33-,34+,35-/m1/s1
InChI Key NRXAOKUYKSNYAW-HDRDTERVSA-N
Popularity 4 references in papers

Physical and Chemical Properties

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Molecular Formula C35H54O10
Molecular Weight 634.80 g/mol
Exact Mass 634.37169792 g/mol
Topological Polar Surface Area (TPSA) 171.00 Ų
XlogP 4.80
Atomic LogP (AlogP) 4.19
H-Bond Acceptor 9
H-Bond Donor 5
Rotatable Bonds 9

Synonyms

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CHEMBL1214513
CHEBI:187613
(2S,3S,4S,5R,6R)-6-[[(3S,5S,8R,9S,10S,13S,14R)-17-[(2R,5R)-5-ethyl-6-methyl-4-oxoheptan-2-yl]-16-hydroxy-10,13-dimethyl-15-oxo-1,2,3,4,5,6,7,8,9,11,12,14-dodecahydrocyclopenta[a]phenanthren-3-yl]oxy]-3,4,5-trihydroxyoxane-2-carboxylic acid

2D Structure

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2D Structure of Pandaroside B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8970 89.70%
Caco-2 - 0.8504 85.04%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.6714 67.14%
Subcellular localzation Mitochondria 0.7124 71.24%
OATP2B1 inhibitior - 0.7164 71.64%
OATP1B1 inhibitior + 0.8365 83.65%
OATP1B3 inhibitior + 0.8803 88.03%
MATE1 inhibitior - 1.0000 100.00%
OCT2 inhibitior - 0.6000 60.00%
BSEP inhibitior - 0.5119 51.19%
P-glycoprotein inhibitior + 0.6919 69.19%
P-glycoprotein substrate - 0.5742 57.42%
CYP3A4 substrate + 0.7311 73.11%
CYP2C9 substrate - 0.7922 79.22%
CYP2D6 substrate - 0.8916 89.16%
CYP3A4 inhibition - 0.6049 60.49%
CYP2C9 inhibition - 0.8131 81.31%
CYP2C19 inhibition - 0.7915 79.15%
CYP2D6 inhibition - 0.9168 91.68%
CYP1A2 inhibition - 0.7969 79.69%
CYP2C8 inhibition + 0.6564 65.64%
CYP inhibitory promiscuity - 0.7970 79.70%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 1.0000 100.00%
Carcinogenicity (trinary) Non-required 0.6858 68.58%
Eye corrosion - 0.9918 99.18%
Eye irritation - 0.9213 92.13%
Skin irritation + 0.5431 54.31%
Skin corrosion - 0.9287 92.87%
Ames mutagenesis - 0.7737 77.37%
Human Ether-a-go-go-Related Gene inhibition + 0.6667 66.67%
Micronuclear - 0.7600 76.00%
Hepatotoxicity - 0.5865 58.65%
skin sensitisation - 0.8280 82.80%
Respiratory toxicity + 0.8778 87.78%
Reproductive toxicity + 0.9000 90.00%
Mitochondrial toxicity + 0.8125 81.25%
Nephrotoxicity - 0.8207 82.07%
Acute Oral Toxicity (c) III 0.4389 43.89%
Estrogen receptor binding + 0.7804 78.04%
Androgen receptor binding + 0.7538 75.38%
Thyroid receptor binding - 0.6055 60.55%
Glucocorticoid receptor binding + 0.7006 70.06%
Aromatase binding + 0.6525 65.25%
PPAR gamma + 0.6083 60.83%
Honey bee toxicity - 0.7468 74.68%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity - 0.5700 57.00%
Fish aquatic toxicity + 0.9930 99.30%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 97.25% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.14% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.88% 96.09%
CHEMBL2581 P07339 Cathepsin D 94.65% 98.95%
CHEMBL4685 P14902 Indoleamine 2,3-dioxygenase 93.59% 96.38%
CHEMBL1806 P11388 DNA topoisomerase II alpha 92.38% 89.00%
CHEMBL3137262 O60341 LSD1/CoREST complex 90.27% 97.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 89.95% 97.25%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.73% 95.56%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 88.46% 96.47%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 87.76% 90.71%
CHEMBL1994 P08235 Mineralocorticoid receptor 86.38% 100.00%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 84.04% 95.89%
CHEMBL4227 P25090 Lipoxin A4 receptor 83.77% 100.00%
CHEMBL1293316 Q9HBX9 Relaxin receptor 1 83.64% 82.50%
CHEMBL3060 Q9Y345 Glycine transporter 2 82.85% 99.17%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 81.87% 99.23%
CHEMBL5608 Q16288 NT-3 growth factor receptor 81.43% 95.89%
CHEMBL5255 O00206 Toll-like receptor 4 81.20% 92.50%
CHEMBL2514 O95665 Neurotensin receptor 2 81.17% 100.00%
CHEMBL3430907 Q96GD4 Aurora kinase B/Inner centromere protein 80.96% 97.50%
CHEMBL4051 P13569 Cystic fibrosis transmembrane conductance regulator 80.38% 95.71%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 44191571
LOTUS LTS0031501
wikiData Q105184876