Palmarumycin B8

Details

Top
Internal ID 14af6b50-17e6-43ad-a76a-b10c1137bd13
Taxonomy Benzenoids > Indanes > Indanones
IUPAC Name methyl (2'R)-2',4'-dihydroxy-3'-oxospiro[2,4-dioxatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaene-3,1'-indene]-2'-carboxylate
SMILES (Canonical) COC(=O)C1(C(=O)C2=C(C13OC4=CC=CC5=C4C(=CC=C5)O3)C=CC=C2O)O
SMILES (Isomeric) COC(=O)[C@]1(C(=O)C2=C(C13OC4=CC=CC5=C4C(=CC=C5)O3)C=CC=C2O)O
InChI InChI=1S/C21H14O7/c1-26-19(24)20(25)18(23)17-12(7-4-8-13(17)22)21(20)27-14-9-2-5-11-6-3-10-15(28-21)16(11)14/h2-10,22,25H,1H3/t20-/m0/s1
InChI Key ILTAFHSQIBJTEW-FQEVSTJZSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

Top
Molecular Formula C21H14O7
Molecular Weight 378.30 g/mol
Exact Mass 378.07395278 g/mol
Topological Polar Surface Area (TPSA) 102.00 Ų
XlogP 3.40
Atomic LogP (AlogP) 2.27
H-Bond Acceptor 7
H-Bond Donor 2
Rotatable Bonds 1

Synonyms

Top
methyl (2'R)-2',4'-dihydroxy-3'-oxospiro[2,4-dioxatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaene-3,1'-indene]-2'-carboxylate
methyl (2'R)-2',4'-dihydroxy-3'-oxospiro(2,4-dioxatricyclo(7.3.1.05,13)trideca-1(12),5,7,9(13),10-pentaene-3,1'-indene)-2'-carboxylate
Methyl (2R)-2,4-dihydroxy-3-oxo-2,3-dihydro-2',4'-dioxaspiro(indene-1,3'-tricyclo(7.3.1.0,)tridecane)-1'(12'),5',7',9'(13'),10'-pentaene-2-carboxylic acid
Methyl (2R)-2,4-dihydroxy-3-oxo-2,3-dihydro-2',4'-dioxaspiro[indene-1,3'-tricyclo[7.3.1.0,]tridecane]-1'(12'),5',7',9'(13'),10'-pentaene-2-carboxylic acid
RefChem:169671
CHEMBL3342639
CHEBI:199146

2D Structure

Top
2D Structure of Palmarumycin B8

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9338 93.38%
Caco-2 - 0.6088 60.88%
Blood Brain Barrier - 0.8000 80.00%
Human oral bioavailability - 0.5286 52.86%
Subcellular localzation Mitochondria 0.7667 76.67%
OATP2B1 inhibitior - 0.7156 71.56%
OATP1B1 inhibitior + 0.9161 91.61%
OATP1B3 inhibitior + 0.9706 97.06%
MATE1 inhibitior - 0.8600 86.00%
OCT2 inhibitior - 0.8750 87.50%
BSEP inhibitior + 0.7361 73.61%
P-glycoprotein inhibitior - 0.5341 53.41%
P-glycoprotein substrate - 0.8453 84.53%
CYP3A4 substrate + 0.5787 57.87%
CYP2C9 substrate - 0.7986 79.86%
CYP2D6 substrate - 0.8638 86.38%
CYP3A4 inhibition - 0.7084 70.84%
CYP2C9 inhibition - 0.7485 74.85%
CYP2C19 inhibition - 0.6779 67.79%
CYP2D6 inhibition - 0.9066 90.66%
CYP1A2 inhibition - 0.7430 74.30%
CYP2C8 inhibition - 0.6590 65.90%
CYP inhibitory promiscuity - 0.8100 81.00%
UGT catelyzed + 0.6000 60.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.4091 40.91%
Eye corrosion - 0.9842 98.42%
Eye irritation - 0.5257 52.57%
Skin irritation - 0.6667 66.67%
Skin corrosion - 0.9386 93.86%
Ames mutagenesis + 0.7446 74.46%
Human Ether-a-go-go-Related Gene inhibition - 0.8210 82.10%
Micronuclear + 0.8400 84.00%
Hepatotoxicity + 0.5210 52.10%
skin sensitisation - 0.8977 89.77%
Respiratory toxicity + 0.5444 54.44%
Reproductive toxicity + 0.7778 77.78%
Mitochondrial toxicity + 0.7375 73.75%
Nephrotoxicity + 0.9018 90.18%
Acute Oral Toxicity (c) III 0.6859 68.59%
Estrogen receptor binding + 0.8128 81.28%
Androgen receptor binding + 0.7146 71.46%
Thyroid receptor binding + 0.6047 60.47%
Glucocorticoid receptor binding + 0.6238 62.38%
Aromatase binding + 0.6073 60.73%
PPAR gamma + 0.7433 74.33%
Honey bee toxicity - 0.9122 91.22%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity - 0.6300 63.00%
Fish aquatic toxicity + 0.9189 91.89%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.47% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.07% 94.45%
CHEMBL2581 P07339 Cathepsin D 93.90% 98.95%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 91.91% 99.23%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 91.06% 94.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 90.23% 95.56%
CHEMBL4208 P20618 Proteasome component C5 89.95% 90.00%
CHEMBL2535 P11166 Glucose transporter 87.11% 98.75%
CHEMBL3401 O75469 Pregnane X receptor 85.75% 94.73%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 85.40% 96.09%
CHEMBL230 P35354 Cyclooxygenase-2 81.30% 89.63%
CHEMBL1293249 Q13887 Kruppel-like factor 5 80.66% 86.33%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 80.62% 99.15%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 101888376
LOTUS LTS0173839
wikiData Q75064553