Palmarumycin B5

Details

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Internal ID 84941428-3384-4511-9387-36b84b88b15e
Taxonomy Benzenoids > Naphthalenes
IUPAC Name (3'S,4'R,6'S,7'R,8'aR)-3',4',6',7',8'a-pentahydroxyspiro[2,4-dioxatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaene-3,8'-3,4,6,7-tetrahydro-2H-naphthalene]-1'-one
SMILES (Canonical) C1C(C(C2=CC(C(C3(C2(C1=O)O)OC4=CC=CC5=C4C(=CC=C5)O3)O)O)O)O
SMILES (Isomeric) C1[C@@H]([C@@H](C2=C[C@@H]([C@H](C3([C@@]2(C1=O)O)OC4=CC=CC5=C4C(=CC=C5)O3)O)O)O)O
InChI InChI=1S/C20H18O8/c21-11-8-15(23)19(26)10(17(11)24)7-12(22)18(25)20(19)27-13-5-1-3-9-4-2-6-14(28-20)16(9)13/h1-7,11-12,17-18,21-22,24-26H,8H2/t11-,12-,17+,18+,19+/m0/s1
InChI Key QUYXDKPCDHWNLZ-OHUKFJGISA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C20H18O8
Molecular Weight 386.40 g/mol
Exact Mass 386.10016753 g/mol
Topological Polar Surface Area (TPSA) 137.00 Ų
XlogP -1.20
Atomic LogP (AlogP) -0.61
H-Bond Acceptor 8
H-Bond Donor 5
Rotatable Bonds 0

Synonyms

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(3'S,4'R,6'S,7'R,8'aR)-3',4',6',7',8'a-pentahydroxyspiro[2,4-dioxatricyclo[7.3.1.05,13]trideca-1(12),5,7,9(13),10-pentaene-3,8'-3,4,6,7-tetrahydro-2H-naphthalene]-1'-one
(3'S,4'R,6'S,7'R,8'aR)-3',4',6',7',8'a-pentahydroxyspiro(2,4-dioxatricyclo(7.3.1.05,13)trideca-1(12),5,7,9(13),10-pentaene-3,8'-3,4,6,7-tetrahydro-2H-naphthalene)-1'-one
RefChem:169668
CHEMBL3342636
CHEBI:203646

2D Structure

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2D Structure of Palmarumycin B5

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9329 93.29%
Caco-2 - 0.8992 89.92%
Blood Brain Barrier - 0.6750 67.50%
Human oral bioavailability - 0.5143 51.43%
Subcellular localzation Mitochondria 0.5823 58.23%
OATP2B1 inhibitior - 0.5716 57.16%
OATP1B1 inhibitior + 0.9394 93.94%
OATP1B3 inhibitior + 0.9177 91.77%
MATE1 inhibitior - 0.9200 92.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.6883 68.83%
P-glycoprotein inhibitior - 0.7407 74.07%
P-glycoprotein substrate - 0.8926 89.26%
CYP3A4 substrate + 0.5434 54.34%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7688 76.88%
CYP3A4 inhibition - 0.7873 78.73%
CYP2C9 inhibition - 0.8371 83.71%
CYP2C19 inhibition - 0.8263 82.63%
CYP2D6 inhibition - 0.8834 88.34%
CYP1A2 inhibition - 0.9271 92.71%
CYP2C8 inhibition - 0.8207 82.07%
CYP inhibitory promiscuity - 0.9098 90.98%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.4616 46.16%
Eye corrosion - 0.9881 98.81%
Eye irritation - 0.8816 88.16%
Skin irritation - 0.6325 63.25%
Skin corrosion - 0.9340 93.40%
Ames mutagenesis + 0.6600 66.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8076 80.76%
Micronuclear + 0.7059 70.59%
Hepatotoxicity + 0.5250 52.50%
skin sensitisation - 0.6713 67.13%
Respiratory toxicity + 0.6111 61.11%
Reproductive toxicity + 0.8222 82.22%
Mitochondrial toxicity + 0.6875 68.75%
Nephrotoxicity + 0.7684 76.84%
Acute Oral Toxicity (c) III 0.3448 34.48%
Estrogen receptor binding + 0.7620 76.20%
Androgen receptor binding + 0.7104 71.04%
Thyroid receptor binding + 0.5770 57.70%
Glucocorticoid receptor binding + 0.7687 76.87%
Aromatase binding + 0.7030 70.30%
PPAR gamma + 0.7306 73.06%
Honey bee toxicity - 0.7995 79.95%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.5800 58.00%
Fish aquatic toxicity + 0.9254 92.54%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 97.94% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 93.78% 95.56%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 89.91% 99.23%
CHEMBL3137262 O60341 LSD1/CoREST complex 89.23% 97.09%
CHEMBL2581 P07339 Cathepsin D 88.31% 98.95%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 87.11% 85.14%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 86.86% 94.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 85.17% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 101888373
LOTUS LTS0062555
wikiData Q77379618