Paenilamicin B1

Details

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Internal ID b6ac9683-f02e-44c6-929a-602195b44928
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Peptides
IUPAC Name (2R,3S,5R)-9-amino-N-[(2R)-1-[[(2S)-1-[[(2R,3R)-3-amino-1-[[(2S,3R,5S)-7-[[(2S)-1-[[2-[3-(4-aminobutylamino)propylamino]-2-oxoethyl]amino]-3-(methylamino)-1-oxopropan-2-yl]amino]-1,3,5-trihydroxy-7-oxoheptan-2-yl]amino]-6-(diaminomethylideneamino)-1-oxohexan-2-yl]amino]-3-(methylamino)-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]-2,3,5-trihydroxynonanamide
SMILES (Canonical) CC(C(=O)NC(CNC)C(=O)NC(C(CCCN=C(N)N)N)C(=O)NC(CO)C(CC(CC(=O)NC(CNC)C(=O)NCC(=O)NCCCNCCCCN)O)O)NC(=O)C(C(CC(CCCCN)O)O)O
SMILES (Isomeric) C[C@H](C(=O)N[C@@H](CNC)C(=O)N[C@H]([C@@H](CCCN=C(N)N)N)C(=O)N[C@@H](CO)[C@@H](C[C@@H](CC(=O)N[C@@H](CNC)C(=O)NCC(=O)NCCCNCCCCN)O)O)NC(=O)[C@@H]([C@H](C[C@@H](CCCCN)O)O)O
InChI InChI=1S/C43H88N16O13/c1-25(55-42(72)37(67)33(64)18-26(61)10-4-5-12-44)38(68)57-30(22-50-3)40(70)59-36(28(46)11-8-16-53-43(47)48)41(71)58-31(24-60)32(63)19-27(62)20-34(65)56-29(21-49-2)39(69)54-23-35(66)52-17-9-15-51-14-7-6-13-45/h25-33,36-37,49-51,60-64,67H,4-24,44-46H2,1-3H3,(H,52,66)(H,54,69)(H,55,72)(H,56,65)(H,57,68)(H,58,71)(H,59,70)(H4,47,48,53)/t25-,26-,27+,28-,29+,30+,31+,32-,33+,36-,37-/m1/s1
InChI Key BQTCONVHRFKHOI-CDNLDTHVSA-N
Popularity 0 references in papers

Physical and Chemical Properties

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Molecular Formula C43H88N16O13
Molecular Weight 1037.30 g/mol
Exact Mass 1036.67167693 g/mol
Topological Polar Surface Area (TPSA) 504.00 Ų
XlogP -9.70
Atomic LogP (AlogP) -9.70
H-Bond Acceptor 20
H-Bond Donor 21
Rotatable Bonds 42

Synonyms

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RefChem:169564
(2R,3S,5R)-9-Amino-N-((1R)-1-(((1S)-1-(((1R,2R)-2-amino-1-(((2S,3R,5S)-6-(((1S)-1-((((3-((4-aminobutyl)amino)propyl)-C-hydroxycarbonimidoyl)methyl)-C-hydroxycarbonimidoyl)-2-(methylamino)ethyl)-C-hydroxycarbonimidoyl)-1,3,5-trihydroxyhexan-2-yl)-C-hydroxycarbonimidoyl)-5-carbamimidamidopentyl)-C-hydroxycarbonimidoyl)-2-(methylamino)ethyl)-C-hydroxycarbonimidoyl)ethyl)-2,3,5-trihydroxynonanimidate
(2R,3S,5R)-9-amino-N-((2R)-1-(((2S)-1-(((2R,3R)-3-amino-1-(((2S,3R,5S)-7-(((2S)-1-((2-(3-(4-aminobutylamino)propylamino)-2-oxoethyl)amino)-3-(methylamino)-1-oxopropan-2-yl)amino)-1,3,5-trihydroxy-7-oxoheptan-2-yl)amino)-6-(diaminomethylideneamino)-1-oxohexan-2-yl)amino)-3-(methylamino)-1-oxopropan-2-yl)amino)-1-oxopropan-2-yl)-2,3,5-trihydroxynonanamide
(2R,3S,5R)-9-Amino-N-[(1R)-1-{[(1S)-1-{[(1R,2R)-2-amino-1-{[(2S,3R,5S)-6-{[(1S)-1-{[({3-[(4-aminobutyl)amino]propyl}-C-hydroxycarbonimidoyl)methyl]-C-hydroxycarbonimidoyl}-2-(methylamino)ethyl]-C-hydroxycarbonimidoyl}-1,3,5-trihydroxyhexan-2-yl]-C-hydroxycarbonimidoyl}-5-carbamimidamidopentyl]-C-hydroxycarbonimidoyl}-2-(methylamino)ethyl]-C-hydroxycarbonimidoyl}ethyl]-2,3,5-trihydroxynonanimidate
(2R,3S,5R)-9-amino-N-[(2R)-1-[[(2S)-1-[[(2R,3R)-3-amino-1-[[(2S,3R,5S)-7-[[(2S)-1-[[2-[3-(4-aminobutylamino)propylamino]-2-oxoethyl]amino]-3-(methylamino)-1-oxopropan-2-yl]amino]-1,3,5-trihydroxy-7-oxoheptan-2-yl]amino]-6-(diaminomethylideneamino)-1-oxohexan-2-yl]amino]-3-(methylamino)-1-oxopropan-2-yl]amino]-1-oxopropan-2-yl]-2,3,5-trihydroxynonanamide
CHEBI:222140

2D Structure

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2D Structure of Paenilamicin B1

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.4613 46.13%
Caco-2 - 0.8582 85.82%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Mitochondria 0.6869 68.69%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8449 84.49%
OATP1B3 inhibitior + 0.9364 93.64%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.7250 72.50%
BSEP inhibitior + 0.8647 86.47%
P-glycoprotein inhibitior + 0.7398 73.98%
P-glycoprotein substrate + 0.8658 86.58%
CYP3A4 substrate + 0.7111 71.11%
CYP2C9 substrate - 0.8095 80.95%
CYP2D6 substrate - 0.7779 77.79%
CYP3A4 inhibition - 0.9131 91.31%
CYP2C9 inhibition - 0.8510 85.10%
CYP2C19 inhibition - 0.8273 82.73%
CYP2D6 inhibition - 0.8813 88.13%
CYP1A2 inhibition - 0.8398 83.98%
CYP2C8 inhibition + 0.6322 63.22%
CYP inhibitory promiscuity - 0.9938 99.38%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.8800 88.00%
Carcinogenicity (trinary) Non-required 0.6425 64.25%
Eye corrosion - 0.9806 98.06%
Eye irritation - 0.8969 89.69%
Skin irritation - 0.7916 79.16%
Skin corrosion - 0.9337 93.37%
Ames mutagenesis - 0.5700 57.00%
Human Ether-a-go-go-Related Gene inhibition - 0.4006 40.06%
Micronuclear + 0.5700 57.00%
Hepatotoxicity + 0.5303 53.03%
skin sensitisation - 0.8451 84.51%
Respiratory toxicity + 0.7556 75.56%
Reproductive toxicity + 0.5556 55.56%
Mitochondrial toxicity + 0.5625 56.25%
Nephrotoxicity + 0.5536 55.36%
Acute Oral Toxicity (c) III 0.6272 62.72%
Estrogen receptor binding + 0.7178 71.78%
Androgen receptor binding + 0.7095 70.95%
Thyroid receptor binding + 0.5452 54.52%
Glucocorticoid receptor binding + 0.6286 62.86%
Aromatase binding + 0.6972 69.72%
PPAR gamma + 0.7378 73.78%
Honey bee toxicity - 0.7500 75.00%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.5900 59.00%
Fish aquatic toxicity - 0.9511 95.11%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4040 P28482 MAP kinase ERK2 99.98% 83.82%
CHEMBL2581 P07339 Cathepsin D 99.85% 98.95%
CHEMBL1907594 P30926 Neuronal acetylcholine receptor; alpha3/beta4 99.40% 97.23%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 98.50% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.44% 96.09%
CHEMBL2094135 Q96BI3 Gamma-secretase 98.32% 98.05%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 97.48% 97.29%
CHEMBL3060 Q9Y345 Glycine transporter 2 97.29% 99.17%
CHEMBL1907591 P30926 Neuronal acetylcholine receptor; alpha4/beta4 96.91% 100.00%
CHEMBL3038469 P24941 CDK2/Cyclin A 95.43% 91.38%
CHEMBL2107 P61073 C-X-C chemokine receptor type 4 95.12% 93.10%
CHEMBL1255126 O15151 Protein Mdm4 94.84% 90.20%
CHEMBL4581 P52732 Kinesin-like protein 1 94.27% 93.18%
CHEMBL2514 O95665 Neurotensin receptor 2 94.22% 100.00%
CHEMBL236 P41143 Delta opioid receptor 94.19% 99.35%
CHEMBL4777 P25929 Neuropeptide Y receptor type 1 93.22% 96.67%
CHEMBL5701 Q9H2K8 Serine/threonine-protein kinase TAO3 92.75% 96.67%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 92.71% 90.71%
CHEMBL1795139 Q8IU80 Transmembrane protease serine 6 92.59% 98.33%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 92.45% 96.00%
CHEMBL2885 P07451 Carbonic anhydrase III 92.14% 87.45%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 91.86% 96.47%
CHEMBL222 P23975 Norepinephrine transporter 91.77% 96.06%
CHEMBL230 P35354 Cyclooxygenase-2 91.21% 89.63%
CHEMBL3018 Q9Y5Y6 Matriptase 91.09% 98.33%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 90.61% 97.21%
CHEMBL3392948 Q9NP59 Solute carrier family 40 member 1 90.48% 95.00%
CHEMBL5261 Q7L7X3 Serine/threonine-protein kinase TAO1 90.27% 89.33%
CHEMBL3176 O43603 Galanin receptor 2 89.78% 98.89%
CHEMBL4816 Q9Y243 Serine/threonine-protein kinase AKT3 89.49% 96.28%
CHEMBL3837 P07711 Cathepsin L 89.35% 96.61%
CHEMBL4018 P49146 Neuropeptide Y receptor type 2 89.10% 98.94%
CHEMBL2973 O75116 Rho-associated protein kinase 2 88.73% 96.73%
CHEMBL4588 P22894 Matrix metalloproteinase 8 88.62% 94.66%
CHEMBL3308 P55212 Caspase-6 87.92% 97.56%
CHEMBL260 Q16539 MAP kinase p38 alpha 87.88% 97.78%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 87.24% 92.86%
CHEMBL3776 Q14790 Caspase-8 86.55% 97.06%
CHEMBL3267 P48736 PI3-kinase p110-gamma subunit 86.40% 95.71%
CHEMBL2413 P32246 C-C chemokine receptor type 1 85.87% 89.50%
CHEMBL4227 P25090 Lipoxin A4 receptor 85.62% 100.00%
CHEMBL2664 P23526 Adenosylhomocysteinase 85.11% 86.67%
CHEMBL3004 P33527 Multidrug resistance-associated protein 1 84.97% 96.37%
CHEMBL340 P08684 Cytochrome P450 3A4 84.59% 91.19%
CHEMBL1744525 P43490 Nicotinamide phosphoribosyltransferase 84.41% 96.25%
CHEMBL204 P00734 Thrombin 84.27% 96.01%
CHEMBL4822 P56817 Beta-secretase 1 83.76% 97.35%
CHEMBL3976 Q9UHL4 Dipeptidyl peptidase II 82.83% 92.29%
CHEMBL2815 P04629 Nerve growth factor receptor Trk-A 82.17% 87.16%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 81.44% 96.90%
CHEMBL2535 P11166 Glucose transporter 81.35% 98.75%
CHEMBL1075317 P61964 WD repeat-containing protein 5 81.03% 96.33%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 80.93% 96.95%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 80.81% 95.89%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 80.29% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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Cross-Links

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PubChem 145720660
LOTUS LTS0082203
wikiData Q104944556