Pachypodantine

Details

Top
Internal ID 1ac39bd7-508e-441a-a095-62e0ca020b82
Taxonomy Alkaloids and derivatives > Aporphines
IUPAC Name (12S,13S)-13-methoxy-3,5-dioxa-11-azapentacyclo[10.7.1.02,6.08,20.014,19]icosa-1(20),2(6),7,14,16,18-hexaene
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C18H17NO3/c1-20-17-12-5-3-2-4-11(12)15-14-10(6-7-19-16(14)17)8-13-18(15)22-9-21-13/h2-5,8,16-17,19H,6-7,9H2,1H3/t16-,17-/m0/s1
InChI Key OBJBIHSGZLMMBX-IRXDYDNUSA-N
Popularity 4 references in papers

Physical and Chemical Properties

Top
Molecular Formula C18H17NO3
Molecular Weight 295.30 g/mol
Exact Mass 295.12084340 g/mol
Topological Polar Surface Area (TPSA) 39.70 Ų
XlogP 2.30
Atomic LogP (AlogP) 2.97
H-Bond Acceptor 4
H-Bond Donor 1
Rotatable Bonds 1

Synonyms

Top
(12S,13S)-13-methoxy-3,5-dioxa-11-azapentacyclo(10.7.1.02,6.08,20.014,19)icosa-1(20),2(6),7,14,16,18-hexaene
(12S,13S)-13-methoxy-3,5-dioxa-11-azapentacyclo[10.7.1.02,6.08,20.014,19]icosa-1(20),2(6),7,14,16,18-hexaene
RefChem:169455
CHEMBL523036

2D Structure

Top
2D Structure of Pachypodantine

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9900 99.00%
Caco-2 + 0.8942 89.42%
Blood Brain Barrier + 0.8000 80.00%
Human oral bioavailability + 0.5143 51.43%
Subcellular localzation Lysosomes 0.4509 45.09%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9110 91.10%
OATP1B3 inhibitior + 0.9569 95.69%
MATE1 inhibitior - 0.9600 96.00%
OCT2 inhibitior - 0.7000 70.00%
BSEP inhibitior + 0.7310 73.10%
P-glycoprotein inhibitior - 0.6351 63.51%
P-glycoprotein substrate - 0.6116 61.16%
CYP3A4 substrate + 0.6145 61.45%
CYP2C9 substrate - 0.8382 83.82%
CYP2D6 substrate + 0.5685 56.85%
CYP3A4 inhibition - 0.6874 68.74%
CYP2C9 inhibition - 0.6866 68.66%
CYP2C19 inhibition + 0.5184 51.84%
CYP2D6 inhibition + 0.7717 77.17%
CYP1A2 inhibition + 0.7978 79.78%
CYP2C8 inhibition - 0.5729 57.29%
CYP inhibitory promiscuity + 0.7959 79.59%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9900 99.00%
Carcinogenicity (trinary) Non-required 0.5989 59.89%
Eye corrosion - 0.9863 98.63%
Eye irritation - 0.9853 98.53%
Skin irritation - 0.7050 70.50%
Skin corrosion - 0.9274 92.74%
Ames mutagenesis + 0.7800 78.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7768 77.68%
Micronuclear + 0.5800 58.00%
Hepatotoxicity - 0.7125 71.25%
skin sensitisation - 0.8270 82.70%
Respiratory toxicity + 0.8000 80.00%
Reproductive toxicity + 0.8889 88.89%
Mitochondrial toxicity + 0.8375 83.75%
Nephrotoxicity - 0.5717 57.17%
Acute Oral Toxicity (c) III 0.4791 47.91%
Estrogen receptor binding + 0.6539 65.39%
Androgen receptor binding + 0.7731 77.31%
Thyroid receptor binding + 0.6395 63.95%
Glucocorticoid receptor binding + 0.7036 70.36%
Aromatase binding + 0.5873 58.73%
PPAR gamma + 0.6825 68.25%
Honey bee toxicity - 0.7719 77.19%
Biodegradation - 0.8750 87.50%
Crustacea aquatic toxicity + 0.5700 57.00%
Fish aquatic toxicity - 0.8999 89.99%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 97.77% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.48% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.28% 91.11%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 92.83% 96.77%
CHEMBL3137262 O60341 LSD1/CoREST complex 91.76% 97.09%
CHEMBL1293249 Q13887 Kruppel-like factor 5 90.92% 86.33%
CHEMBL2373 P21730 C5a anaphylatoxin chemotactic receptor 88.09% 92.62%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.62% 95.89%
CHEMBL5028 O14672 ADAM10 84.25% 97.50%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 84.15% 95.56%
CHEMBL5311 P37023 Serine/threonine-protein kinase receptor R3 83.65% 82.67%
CHEMBL2535 P11166 Glucose transporter 82.75% 98.75%
CHEMBL2039 P27338 Monoamine oxidase B 81.33% 92.51%
CHEMBL1806 P11388 DNA topoisomerase II alpha 81.15% 89.00%
CHEMBL2056 P21728 Dopamine D1 receptor 80.93% 91.00%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Duguetia staudtii
Greenwayodendron oliveri
Greenwayodendron suaveolens
Orobanche coerulescens

Cross-Links

Top
PubChem 44566390
NPASS NPC267408
LOTUS LTS0204136
wikiData Q105189028