Orotidine

Details

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Internal ID 832fdc0b-c4cc-41fc-9a2c-7387427c89c5
Taxonomy Nucleosides, nucleotides, and analogues > Pyrimidine nucleosides
IUPAC Name 3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2,6-dioxopyrimidine-4-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C10H12N2O8/c13-2-4-6(15)7(16)8(20-4)12-3(9(17)18)1-5(14)11-10(12)19/h1,4,6-8,13,15-16H,2H2,(H,17,18)(H,11,14,19)/t4-,6-,7-,8-/m1/s1
InChI Key FKCRAVPPBFWEJD-XVFCMESISA-N
Popularity 490 references in papers

Physical and Chemical Properties

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Molecular Formula C10H12N2O8
Molecular Weight 288.21 g/mol
Exact Mass 288.05936535 g/mol
Topological Polar Surface Area (TPSA) 157.00 Ų
XlogP -2.60
Atomic LogP (AlogP) -3.15
H-Bond Acceptor 8
H-Bond Donor 5
Rotatable Bonds 3

Synonyms

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314-50-1
6-Carboxyuridine
3-Ribofuranosylorotic acid
Uridin-6-carboxylic acid
Uridine-6-carboxylicacid
B350MC02GZ
3-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-2,6-dioxopyrimidine-4-carboxylic acid
Uridine-6-carboxylic acid
UNII-B350MC02GZ
Orotic acid riboside
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Orotidine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.9325 93.25%
Caco-2 - 0.9629 96.29%
Blood Brain Barrier + 0.5250 52.50%
Human oral bioavailability - 0.8571 85.71%
Subcellular localzation Nucleus 0.5429 54.29%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8811 88.11%
OATP1B3 inhibitior + 0.9482 94.82%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 1.0000 100.00%
BSEP inhibitior - 0.9816 98.16%
P-glycoprotein inhibitior - 0.9321 93.21%
P-glycoprotein substrate - 0.9586 95.86%
CYP3A4 substrate - 0.6061 60.61%
CYP2C9 substrate - 0.5979 59.79%
CYP2D6 substrate - 0.8809 88.09%
CYP3A4 inhibition - 0.9415 94.15%
CYP2C9 inhibition - 0.9629 96.29%
CYP2C19 inhibition - 0.9359 93.59%
CYP2D6 inhibition - 0.9165 91.65%
CYP1A2 inhibition - 0.9219 92.19%
CYP2C8 inhibition - 0.9544 95.44%
CYP inhibitory promiscuity - 0.9724 97.24%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.8800 88.00%
Carcinogenicity (trinary) Non-required 0.4875 48.75%
Eye corrosion - 0.9901 99.01%
Eye irritation - 0.8253 82.53%
Skin irritation - 0.8004 80.04%
Skin corrosion - 0.9512 95.12%
Ames mutagenesis - 0.6541 65.41%
Human Ether-a-go-go-Related Gene inhibition - 0.7787 77.87%
Micronuclear + 0.9900 99.00%
Hepatotoxicity + 0.5709 57.09%
skin sensitisation - 0.8814 88.14%
Respiratory toxicity + 0.6889 68.89%
Reproductive toxicity + 0.9778 97.78%
Mitochondrial toxicity + 0.8875 88.75%
Nephrotoxicity - 0.7201 72.01%
Acute Oral Toxicity (c) III 0.5678 56.78%
Estrogen receptor binding - 0.5595 55.95%
Androgen receptor binding - 0.4824 48.24%
Thyroid receptor binding - 0.6147 61.47%
Glucocorticoid receptor binding + 0.6467 64.67%
Aromatase binding - 0.5668 56.68%
PPAR gamma + 0.5858 58.58%
Honey bee toxicity - 0.9312 93.12%
Biodegradation - 0.6000 60.00%
Crustacea aquatic toxicity - 0.8300 83.00%
Fish aquatic toxicity - 0.7340 73.40%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.80% 96.09%
CHEMBL4040 P28482 MAP kinase ERK2 95.38% 83.82%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 95.05% 86.92%
CHEMBL2581 P07339 Cathepsin D 94.94% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 89.39% 91.11%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 89.10% 94.45%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 84.43% 93.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 83.52% 89.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 82.66% 95.56%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 92751
LOTUS LTS0197086
wikiData Q10859719