Nikkomycin S(X)

Details

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Internal ID 4d811d1a-beca-4871-8d87-c73433c8563f
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > Glycosylamines
IUPAC Name (2R,3R,3aS,5S,7R,7aR)-2-(5-formyl-2-oxo-1H-imidazol-3-yl)-3,7-dihydroxy-3,3a,5,6,7,7a-hexahydro-2H-furo[3,2-b]pyran-5-carboxylic acid
SMILES (Canonical) C1C(C2C(C(C(O2)N3C=C(NC3=O)C=O)O)OC1C(=O)O)O
SMILES (Isomeric) C1[C@H]([C@@H]2[C@H]([C@H]([C@@H](O2)N3C=C(NC3=O)C=O)O)O[C@@H]1C(=O)O)O
InChI InChI=1S/C12H14N2O8/c15-3-4-2-14(12(20)13-4)10-7(17)9-8(22-10)5(16)1-6(21-9)11(18)19/h2-3,5-10,16-17H,1H2,(H,13,20)(H,18,19)/t5-,6+,7-,8-,9+,10-/m1/s1
InChI Key UUPCVEZRKOQLAH-PIAOCPBHSA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C12H14N2O8
Molecular Weight 314.25 g/mol
Exact Mass 314.07501541 g/mol
Topological Polar Surface Area (TPSA) 146.00 Ų
XlogP -2.70
Atomic LogP (AlogP) -2.15
H-Bond Acceptor 8
H-Bond Donor 4
Rotatable Bonds 3

Synonyms

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140447-97-8
Nikkomycin SX
Nikkomycin S-X
DTXSID50161397
(2R,3R,3aS,5S,7R,7aR)-2-(5-formyl-2-oxo-1H-imidazol-3-yl)-3,7-dihydroxy-3,3a,5,6,7,7a-hexahydro-2H-furo[3,2-b]pyran-5-carboxylic acid
D-glycero-beta-D-allo-Octafuranuronic acid, 3,7-anhydro-1,6-dideoxy-1-(2,3-dihydro-4-formyl-2-oxo-1H-imidazol-1-yl)-
D-glycero-beta-D-allo-Octofuranuronic acid, 3,7-anhydro-1,6-dideoxy-1-(2,3-dihydro-4-formyl-2-oxo-1H-imidazol-1-yl)-

2D Structure

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2D Structure of Nikkomycin S(X)

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.8926 89.26%
Caco-2 - 0.8898 88.98%
Blood Brain Barrier + 0.5250 52.50%
Human oral bioavailability - 0.5000 50.00%
Subcellular localzation Mitochondria 0.4306 43.06%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9088 90.88%
OATP1B3 inhibitior + 0.9383 93.83%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.9750 97.50%
BSEP inhibitior - 0.9668 96.68%
P-glycoprotein inhibitior - 0.8903 89.03%
P-glycoprotein substrate - 0.8064 80.64%
CYP3A4 substrate + 0.5229 52.29%
CYP2C9 substrate - 0.5979 59.79%
CYP2D6 substrate - 0.8606 86.06%
CYP3A4 inhibition - 0.9762 97.62%
CYP2C9 inhibition - 0.8632 86.32%
CYP2C19 inhibition - 0.8683 86.83%
CYP2D6 inhibition - 0.8248 82.48%
CYP1A2 inhibition - 0.8177 81.77%
CYP2C8 inhibition - 0.8831 88.31%
CYP inhibitory promiscuity - 0.9888 98.88%
UGT catelyzed + 0.9000 90.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.6128 61.28%
Eye corrosion - 0.9892 98.92%
Eye irritation - 0.9390 93.90%
Skin irritation - 0.8024 80.24%
Skin corrosion - 0.9496 94.96%
Ames mutagenesis - 0.5878 58.78%
Human Ether-a-go-go-Related Gene inhibition - 0.8740 87.40%
Micronuclear + 0.9500 95.00%
Hepatotoxicity + 0.6677 66.77%
skin sensitisation - 0.9014 90.14%
Respiratory toxicity + 0.8667 86.67%
Reproductive toxicity + 0.8444 84.44%
Mitochondrial toxicity + 0.8125 81.25%
Nephrotoxicity - 0.5979 59.79%
Acute Oral Toxicity (c) III 0.6273 62.73%
Estrogen receptor binding - 0.5751 57.51%
Androgen receptor binding + 0.5719 57.19%
Thyroid receptor binding - 0.6249 62.49%
Glucocorticoid receptor binding + 0.5546 55.46%
Aromatase binding - 0.5668 56.68%
PPAR gamma - 0.5432 54.32%
Honey bee toxicity - 0.8830 88.30%
Biodegradation - 0.6500 65.00%
Crustacea aquatic toxicity - 0.6600 66.00%
Fish aquatic toxicity - 0.7095 70.95%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 94.34% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.34% 95.56%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 88.46% 91.11%
CHEMBL1806 P11388 DNA topoisomerase II alpha 88.08% 89.00%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 87.96% 99.23%
CHEMBL253 P34972 Cannabinoid CB2 receptor 86.03% 97.25%
CHEMBL2581 P07339 Cathepsin D 86.03% 98.95%
CHEMBL4523377 Q86WV6 Stimulator of interferon genes protein 85.15% 95.48%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 84.94% 85.14%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 84.23% 94.45%
CHEMBL3137262 O60341 LSD1/CoREST complex 82.63% 97.09%
CHEMBL3807 P17706 T-cell protein-tyrosine phosphatase 82.29% 93.00%
CHEMBL3137261 O14744 PRMT5/MEP50 complex 82.05% 100.00%
CHEMBL2850 P49840 Glycogen synthase kinase-3 alpha 81.44% 88.84%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 3035708
LOTUS LTS0102267
wikiData Q83029805