(3R,4S,5S,7R,9E,11R,12S)-12-((1R)-1-Hydroxyethyl)-3,5,7,11-tetramethyl-4-((3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranosyl)oxy)oxacyclododec-9-ene-2,8-dione

Details

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Internal ID 658d65be-4eef-4d65-9f2e-f645cc0f1b45
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Aminosaccharides > Aminoglycosides
IUPAC Name (3R,4S,5S,7R,9E,11R,12S)-4-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-12-[(1R)-1-hydroxyethyl]-3,5,7,11-tetramethyl-1-oxacyclododec-9-ene-2,8-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C25H43NO7/c1-13-9-10-20(28)14(2)11-15(3)22(17(5)24(30)32-23(13)18(6)27)33-25-21(29)19(26(7)8)12-16(4)31-25/h9-10,13-19,21-23,25,27,29H,11-12H2,1-8H3/b10-9+/t13-,14-,15+,16-,17-,18-,19+,21-,22+,23+,25+/m1/s1
InChI Key UEIVQYHYALXCBD-OTUJEKPESA-N
Popularity 18 references in papers

Physical and Chemical Properties

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Molecular Formula C25H43NO7
Molecular Weight 469.60 g/mol
Exact Mass 469.30395271 g/mol
Topological Polar Surface Area (TPSA) 106.00 Ų
XlogP 2.80
Atomic LogP (AlogP) 2.16
H-Bond Acceptor 8
H-Bond Donor 2
Rotatable Bonds 4

Synonyms

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497-73-4
UNII-2BSX67J222
2BSX67J222
CHEBI:29656
Methymycin, 10-deoxy-12-hydroxy-, (12R)-
(3R,4S,5S,7R,9E,11R,12S)-4-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-12-[(1R)-1-hydroxyethyl]-3,5,7,11-tetramethyl-1-oxacyclododec-9-ene-2,8-dione
(12R)-10-Deoxy-12-hydroxymethymycin
NEOMETHYMYCIN [MI]
SCHEMBL652365
CHEMBL521954
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of (3R,4S,5S,7R,9E,11R,12S)-12-((1R)-1-Hydroxyethyl)-3,5,7,11-tetramethyl-4-((3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranosyl)oxy)oxacyclododec-9-ene-2,8-dione

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.7990 79.90%
Caco-2 - 0.7374 73.74%
Blood Brain Barrier - 0.8500 85.00%
Human oral bioavailability - 0.7286 72.86%
Subcellular localzation Mitochondria 0.4299 42.99%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9072 90.72%
OATP1B3 inhibitior + 0.9257 92.57%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.7087 70.87%
P-glycoprotein inhibitior - 0.5156 51.56%
P-glycoprotein substrate + 0.6332 63.32%
CYP3A4 substrate + 0.6662 66.62%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8592 85.92%
CYP3A4 inhibition - 0.7593 75.93%
CYP2C9 inhibition - 0.9212 92.12%
CYP2C19 inhibition - 0.8900 89.00%
CYP2D6 inhibition - 0.9243 92.43%
CYP1A2 inhibition - 0.8646 86.46%
CYP2C8 inhibition - 0.9277 92.77%
CYP inhibitory promiscuity - 0.9815 98.15%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9400 94.00%
Carcinogenicity (trinary) Non-required 0.5228 52.28%
Eye corrosion - 0.9834 98.34%
Eye irritation - 0.9488 94.88%
Skin irritation - 0.7809 78.09%
Skin corrosion - 0.9278 92.78%
Ames mutagenesis - 0.6654 66.54%
Human Ether-a-go-go-Related Gene inhibition - 0.7377 73.77%
Micronuclear + 0.5200 52.00%
Hepatotoxicity + 0.7375 73.75%
skin sensitisation - 0.9000 90.00%
Respiratory toxicity + 0.7889 78.89%
Reproductive toxicity + 0.6667 66.67%
Mitochondrial toxicity + 0.8500 85.00%
Nephrotoxicity - 0.7512 75.12%
Acute Oral Toxicity (c) III 0.5942 59.42%
Estrogen receptor binding + 0.6971 69.71%
Androgen receptor binding - 0.6261 62.61%
Thyroid receptor binding + 0.5319 53.19%
Glucocorticoid receptor binding - 0.5843 58.43%
Aromatase binding - 0.5772 57.72%
PPAR gamma + 0.5208 52.08%
Honey bee toxicity - 0.6331 63.31%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity - 0.5400 54.00%
Fish aquatic toxicity - 0.4633 46.33%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 97.42% 98.95%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.48% 91.11%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.37% 96.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 91.32% 89.00%
CHEMBL4303 P08238 Heat shock protein HSP 90-beta 90.81% 96.77%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 90.40% 85.14%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.52% 95.56%
CHEMBL4208 P20618 Proteasome component C5 86.85% 90.00%
CHEMBL3401 O75469 Pregnane X receptor 82.74% 94.73%
CHEMBL3137262 O60341 LSD1/CoREST complex 82.58% 97.09%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.35% 95.89%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 5282033
LOTUS LTS0088826
wikiData Q27110209