Nebrodenside A

Details

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Internal ID 50f7af57-568b-4e8a-80e6-c860ea42de30
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > Phenolic glycosides
IUPAC Name (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[4-hydroxy-3-(3-methylbut-2-enyl)phenoxy]oxane-3,4,5-triol
SMILES (Canonical) CC(=CCC1=C(C=CC(=C1)OC2C(C(C(C(O2)CO)O)O)O)O)C
SMILES (Isomeric) CC(=CCC1=C(C=CC(=C1)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)C
InChI InChI=1S/C17H24O7/c1-9(2)3-4-10-7-11(5-6-12(10)19)23-17-16(22)15(21)14(20)13(8-18)24-17/h3,5-7,13-22H,4,8H2,1-2H3/t13-,14-,15+,16-,17-/m1/s1
InChI Key CAHCESMRCVPALB-NQNKBUKLSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C17H24O7
Molecular Weight 340.40 g/mol
Exact Mass 340.15220310 g/mol
Topological Polar Surface Area (TPSA) 120.00 Ų
XlogP 1.10
Atomic LogP (AlogP) 0.08
H-Bond Acceptor 7
H-Bond Donor 5
Rotatable Bonds 5

Synonyms

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(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-(4-hydroxy-3-(3-methylbut-2-enyl)phenoxy)oxane-3,4,5-triol
(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-[4-hydroxy-3-(3-methylbut-2-enyl)phenoxy]oxane-3,4,5-triol
RefChem:164951
4-hydroxy-3-(3-methyl-2-butenyl)phenyl beta-d-glucopyranoside
851455-85-1
CHEMBL1933862

2D Structure

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2D Structure of Nebrodenside A

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6464 64.64%
Caco-2 - 0.7921 79.21%
Blood Brain Barrier + 0.5250 52.50%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Mitochondria 0.7502 75.02%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.9413 94.13%
OATP1B3 inhibitior + 0.9609 96.09%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.8500 85.00%
BSEP inhibitior - 0.7249 72.49%
P-glycoprotein inhibitior - 0.9139 91.39%
P-glycoprotein substrate - 0.9422 94.22%
CYP3A4 substrate - 0.5257 52.57%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8081 80.81%
CYP3A4 inhibition - 0.8447 84.47%
CYP2C9 inhibition - 0.6209 62.09%
CYP2C19 inhibition - 0.5523 55.23%
CYP2D6 inhibition - 0.7506 75.06%
CYP1A2 inhibition - 0.5078 50.78%
CYP2C8 inhibition - 0.7697 76.97%
CYP inhibitory promiscuity + 0.5957 59.57%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.7619 76.19%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.9197 91.97%
Skin irritation - 0.8128 81.28%
Skin corrosion - 0.9407 94.07%
Ames mutagenesis - 0.7500 75.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6654 66.54%
Micronuclear - 0.6341 63.41%
Hepatotoxicity - 0.7592 75.92%
skin sensitisation - 0.7544 75.44%
Respiratory toxicity - 0.6333 63.33%
Reproductive toxicity + 0.7000 70.00%
Mitochondrial toxicity - 0.6750 67.50%
Nephrotoxicity + 0.4676 46.76%
Acute Oral Toxicity (c) III 0.6792 67.92%
Estrogen receptor binding - 0.5201 52.01%
Androgen receptor binding - 0.5448 54.48%
Thyroid receptor binding + 0.5484 54.84%
Glucocorticoid receptor binding - 0.5993 59.93%
Aromatase binding + 0.6015 60.15%
PPAR gamma + 0.6925 69.25%
Honey bee toxicity - 0.8421 84.21%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.6600 66.00%
Fish aquatic toxicity + 0.9433 94.33%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.65% 91.11%
CHEMBL3401 O75469 Pregnane X receptor 94.93% 94.73%
CHEMBL1951 P21397 Monoamine oxidase A 93.38% 91.49%
CHEMBL1293255 P15428 15-hydroxyprostaglandin dehydrogenase [NAD+] 91.91% 83.57%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 91.46% 99.15%
CHEMBL226 P30542 Adenosine A1 receptor 90.51% 95.93%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 90.12% 96.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 89.46% 99.17%
CHEMBL1293249 Q13887 Kruppel-like factor 5 88.76% 86.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 86.96% 97.09%
CHEMBL2581 P07339 Cathepsin D 86.61% 98.95%
CHEMBL5608 Q16288 NT-3 growth factor receptor 86.55% 95.89%
CHEMBL4208 P20618 Proteasome component C5 86.50% 90.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 86.04% 94.45%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 85.98% 96.00%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 81.16% 95.56%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 80.03% 94.00%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Polygonatum zanlanscianense

Cross-Links

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PubChem 57391548
NPASS NPC238199