N(1)-(5-phospho-D-ribosyl)glycinamide

Details

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Internal ID eb498b0d-f335-4e54-b43e-88c2ea95a2db
Taxonomy Nucleosides, nucleotides, and analogues > Glycinamide ribonucleotides
IUPAC Name [(2R,3S,4R)-5-[(2-aminoacetyl)amino]-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate
SMILES (Canonical) C(C1C(C(C(O1)NC(=O)CN)O)O)OP(=O)(O)O
SMILES (Isomeric) C([C@@H]1[C@H]([C@H](C(O1)NC(=O)CN)O)O)OP(=O)(O)O
InChI InChI=1S/C7H15N2O8P/c8-1-4(10)9-7-6(12)5(11)3(17-7)2-16-18(13,14)15/h3,5-7,11-12H,1-2,8H2,(H,9,10)(H2,13,14,15)/t3-,5-,6-,7?/m1/s1
InChI Key OBQMLSFOUZUIOB-HJZCUYRDSA-N
Popularity 8 references in papers

Physical and Chemical Properties

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Molecular Formula C7H15N2O8P
Molecular Weight 286.18 g/mol
Exact Mass 286.05660244 g/mol
Topological Polar Surface Area (TPSA) 172.00 Ų
XlogP -6.80
Atomic LogP (AlogP) -3.38
H-Bond Acceptor 7
H-Bond Donor 6
Rotatable Bonds 5

Synonyms

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N-glycyl-5-O-phosphono-D-ribofuranosylamine
N-glycyl-D-ribofuranosylamine 5-(dihydrogen phosphate)
N1-(5-Phospho-D-ribosyl)glycinamide
5-phosphoribosyl glycinamide
SCHEMBL851442
CHEBI:18349
DB02236
[(2R,3S,4R)-5-[(2-aminoacetyl)amino]-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

2D Structure

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2D Structure of N(1)-(5-phospho-D-ribosyl)glycinamide

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8601 86.01%
Caco-2 - 0.8842 88.42%
Blood Brain Barrier - 0.6000 60.00%
Human oral bioavailability - 0.6143 61.43%
Subcellular localzation Mitochondria 0.4072 40.72%
OATP2B1 inhibitior - 0.8567 85.67%
OATP1B1 inhibitior + 0.9270 92.70%
OATP1B3 inhibitior + 0.9419 94.19%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior - 0.9614 96.14%
P-glycoprotein inhibitior - 0.9273 92.73%
P-glycoprotein substrate - 0.9085 90.85%
CYP3A4 substrate + 0.5179 51.79%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8284 82.84%
CYP3A4 inhibition - 0.9591 95.91%
CYP2C9 inhibition - 0.8874 88.74%
CYP2C19 inhibition - 0.8621 86.21%
CYP2D6 inhibition - 0.9182 91.82%
CYP1A2 inhibition - 0.8827 88.27%
CYP2C8 inhibition - 0.9042 90.42%
CYP inhibitory promiscuity - 0.9757 97.57%
UGT catelyzed - 0.5000 50.00%
Carcinogenicity (binary) - 0.8000 80.00%
Carcinogenicity (trinary) Non-required 0.5998 59.98%
Eye corrosion - 0.9709 97.09%
Eye irritation - 0.9814 98.14%
Skin irritation - 0.7488 74.88%
Skin corrosion - 0.9150 91.50%
Ames mutagenesis - 0.6300 63.00%
Human Ether-a-go-go-Related Gene inhibition - 0.6373 63.73%
Micronuclear + 0.8400 84.00%
Hepatotoxicity + 0.5300 53.00%
skin sensitisation - 0.8371 83.71%
Respiratory toxicity + 0.5667 56.67%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity + 0.8625 86.25%
Nephrotoxicity - 0.5963 59.63%
Acute Oral Toxicity (c) III 0.5500 55.00%
Estrogen receptor binding + 0.5810 58.10%
Androgen receptor binding - 0.7142 71.42%
Thyroid receptor binding - 0.4908 49.08%
Glucocorticoid receptor binding + 0.6381 63.81%
Aromatase binding - 0.6522 65.22%
PPAR gamma + 0.5995 59.95%
Honey bee toxicity - 0.7024 70.24%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.8000 80.00%
Fish aquatic toxicity - 0.9322 93.22%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5957 P21589 5'-nucleotidase 94.21% 97.78%
CHEMBL3230 O95977 Sphingosine 1-phosphate receptor Edg-6 93.18% 94.01%
CHEMBL3437 Q16853 Amine oxidase, copper containing 92.59% 94.00%
CHEMBL226 P30542 Adenosine A1 receptor 92.49% 95.93%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 91.82% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 91.23% 91.11%
CHEMBL218 P21554 Cannabinoid CB1 receptor 91.07% 96.61%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 90.38% 97.29%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 89.61% 96.95%
CHEMBL1293267 Q9HC97 G-protein coupled receptor 35 87.53% 89.34%
CHEMBL1075162 Q13304 Uracil nucleotide/cysteinyl leukotriene receptor 87.47% 80.33%
CHEMBL3060 Q9Y345 Glycine transporter 2 86.71% 99.17%
CHEMBL3401 O75469 Pregnane X receptor 84.82% 94.73%
CHEMBL4040 P28482 MAP kinase ERK2 84.68% 83.82%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 84.43% 94.33%
CHEMBL1293294 P51151 Ras-related protein Rab-9A 83.77% 87.67%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.19% 97.09%
CHEMBL5255 O00206 Toll-like receptor 4 82.15% 92.50%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 5459918
LOTUS LTS0275898
wikiData Q100600980