N-Desmethoxyrankinidine

Details

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Internal ID 1d99132b-27f7-49c5-8c4b-a04887eb71fd
Taxonomy Alkaloids and derivatives > Gelsemium alkaloids
IUPAC Name (7Z)-7-ethylidenespiro[11-oxa-5-azatricyclo[6.3.1.04,9]dodecane-2,3'-1H-indole]-2'-one
SMILES (Canonical) CC=C1CNC2CC3(C4CC1C2CO4)C5=CC=CC=C5NC3=O
SMILES (Isomeric) C/C=C/1\CNC2CC3(C4CC1C2CO4)C5=CC=CC=C5NC3=O
InChI InChI=1S/C19H22N2O2/c1-2-11-9-20-16-8-19(17-7-12(11)13(16)10-23-17)14-5-3-4-6-15(14)21-18(19)22/h2-6,12-13,16-17,20H,7-10H2,1H3,(H,21,22)/b11-2+
InChI Key YIOBXNAEUXWNQS-BIIKFXOESA-N
Popularity 1 reference in papers

Physical and Chemical Properties

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Molecular Formula C19H22N2O2
Molecular Weight 310.40 g/mol
Exact Mass 310.168127949 g/mol
Topological Polar Surface Area (TPSA) 50.40 Ų
XlogP 1.00
Atomic LogP (AlogP) 2.22
H-Bond Acceptor 3
H-Bond Donor 2
Rotatable Bonds 0

Synonyms

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N-Demethoxyrankinidine
122590-02-7
Humantenine, 1-demethoxy-4-demethyl-
Spiro(3H-indole-3,8'(7'H)-(4,7)methanooxepino(4,3-b)pyridin)-2(1H)-one, 3'-ethylidene-1',2',3',4',4'a,5',9',9'a-octahydro-, (3S,3'Z,4'R,4'aS,7'R,9'aS)-

2D Structure

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2D Structure of N-Desmethoxyrankinidine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9965 99.65%
Caco-2 + 0.6039 60.39%
Blood Brain Barrier + 0.8629 86.29%
Human oral bioavailability + 0.6571 65.71%
Subcellular localzation Mitochondria 0.5038 50.38%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8718 87.18%
OATP1B3 inhibitior + 0.9493 94.93%
MATE1 inhibitior - 0.8200 82.00%
OCT2 inhibitior - 0.7250 72.50%
BSEP inhibitior + 0.5552 55.52%
P-glycoprotein inhibitior - 0.7887 78.87%
P-glycoprotein substrate - 0.5722 57.22%
CYP3A4 substrate + 0.6543 65.43%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.7320 73.20%
CYP3A4 inhibition - 0.9362 93.62%
CYP2C9 inhibition - 0.8119 81.19%
CYP2C19 inhibition - 0.7538 75.38%
CYP2D6 inhibition - 0.8646 86.46%
CYP1A2 inhibition - 0.7427 74.27%
CYP2C8 inhibition + 0.4597 45.97%
CYP inhibitory promiscuity - 0.7327 73.27%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9500 95.00%
Carcinogenicity (trinary) Non-required 0.5597 55.97%
Eye corrosion - 0.9867 98.67%
Eye irritation - 0.9913 99.13%
Skin irritation - 0.7796 77.96%
Skin corrosion - 0.9300 93.00%
Ames mutagenesis + 0.6063 60.63%
Human Ether-a-go-go-Related Gene inhibition + 0.7744 77.44%
Micronuclear + 0.6400 64.00%
Hepatotoxicity + 0.5125 51.25%
skin sensitisation - 0.8167 81.67%
Respiratory toxicity + 0.7444 74.44%
Reproductive toxicity + 0.9222 92.22%
Mitochondrial toxicity + 0.8625 86.25%
Nephrotoxicity + 0.5489 54.89%
Acute Oral Toxicity (c) III 0.5618 56.18%
Estrogen receptor binding + 0.6424 64.24%
Androgen receptor binding + 0.6385 63.85%
Thyroid receptor binding - 0.5202 52.02%
Glucocorticoid receptor binding - 0.7761 77.61%
Aromatase binding + 0.5270 52.70%
PPAR gamma - 0.5260 52.60%
Honey bee toxicity - 0.7677 76.77%
Biodegradation - 0.8500 85.00%
Crustacea aquatic toxicity + 0.6100 61.00%
Fish aquatic toxicity + 0.7600 76.00%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 95.54% 91.11%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 94.53% 95.56%
CHEMBL3137262 O60341 LSD1/CoREST complex 93.32% 97.09%
CHEMBL253 P34972 Cannabinoid CB2 receptor 93.26% 97.25%
CHEMBL4026 P40763 Signal transducer and activator of transcription 3 88.51% 82.69%
CHEMBL1293249 Q13887 Kruppel-like factor 5 88.46% 86.33%
CHEMBL2581 P07339 Cathepsin D 87.55% 98.95%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 87.08% 99.23%
CHEMBL2553 Q15418 Ribosomal protein S6 kinase alpha 1 87.04% 85.11%
CHEMBL1937 Q92769 Histone deacetylase 2 86.28% 94.75%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 85.86% 96.09%
CHEMBL2850 P49840 Glycogen synthase kinase-3 alpha 82.29% 88.84%
CHEMBL1806 P11388 DNA topoisomerase II alpha 81.35% 89.00%
CHEMBL299 P17252 Protein kinase C alpha 81.04% 98.03%
CHEMBL1994 P08235 Mineralocorticoid receptor 80.92% 100.00%
CHEMBL3524 P56524 Histone deacetylase 4 80.18% 92.97%
CHEMBL1821 P08173 Muscarinic acetylcholine receptor M4 80.10% 94.08%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
Gelsemium elegans

Cross-Links

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PubChem 5316594
NPASS NPC211139
LOTUS LTS0096696
wikiData Q105348932