N-(3-((Carboxymethyl)amino)-5-hydroxy-5-(hydroxymethyl)-2-methoxy-2-cyclohexen-1-ylidene)-L-serine

Details

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Internal ID e581778a-6218-49d4-9006-ae750f0e3706
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Alpha amino acids and derivatives > Serine and derivatives
IUPAC Name (2S)-2-[[(5R)-3-(carboxymethylimino)-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohexen-1-yl]amino]-3-hydroxypropanoic acid
SMILES (Canonical) COC1=C(CC(CC1=NCC(=O)O)(CO)O)NC(CO)C(=O)O
SMILES (Isomeric) COC1=C(C[C@@](CC1=NCC(=O)O)(CO)O)N[C@@H](CO)C(=O)O
InChI InChI=1S/C13H20N2O8/c1-23-11-7(14-4-10(18)19)2-13(22,6-17)3-8(11)15-9(5-16)12(20)21/h9,15-17,22H,2-6H2,1H3,(H,18,19)(H,20,21)/t9-,13-/m0/s1
InChI Key HXQQNYSFSLBXQJ-ZANVPECISA-N
Popularity 47 references in papers

Physical and Chemical Properties

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Molecular Formula C13H20N2O8
Molecular Weight 332.31 g/mol
Exact Mass 332.12196560 g/mol
Topological Polar Surface Area (TPSA) 169.00 Ų
XlogP -2.20
Atomic LogP (AlogP) -2.08
H-Bond Acceptor 8
H-Bond Donor 6
Rotatable Bonds 8

Synonyms

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Shinorine [MI]
CP6FF0KM7E
UNII-CP6FF0KM7E
73112-73-9
(E)-N-((5S)-3-((Carboxymethyl)amino)-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-2-en-1-ylidene)serine
N-(3-((Carboxymethyl)amino)-5-hydroxy-5-(hydroxymethyl)-2-methoxy-2-cyclohexen-1-ylidene)-L-serine
SHINORINE [INCI]
CHEBI:131712
GLXC-26554
(E)-N-[(5S)-3-[(carboxymethyl)amino]-5-hydroxy-5-(hydroxymethyl)-2-methoxycyclohex-2-en-1-ylidene]-L-serine

2D Structure

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2D Structure of N-(3-((Carboxymethyl)amino)-5-hydroxy-5-(hydroxymethyl)-2-methoxy-2-cyclohexen-1-ylidene)-L-serine

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.8790 87.90%
Caco-2 - 0.7871 78.71%
Blood Brain Barrier - 0.7000 70.00%
Human oral bioavailability - 0.5000 50.00%
Subcellular localzation Mitochondria 0.7165 71.65%
OATP2B1 inhibitior - 0.8549 85.49%
OATP1B1 inhibitior + 0.9176 91.76%
OATP1B3 inhibitior + 0.9397 93.97%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.9088 90.88%
BSEP inhibitior - 0.6905 69.05%
P-glycoprotein inhibitior - 0.8933 89.33%
P-glycoprotein substrate - 0.7945 79.45%
CYP3A4 substrate + 0.5615 56.15%
CYP2C9 substrate - 0.6000 60.00%
CYP2D6 substrate - 0.8354 83.54%
CYP3A4 inhibition - 0.9725 97.25%
CYP2C9 inhibition - 0.8738 87.38%
CYP2C19 inhibition - 0.8580 85.80%
CYP2D6 inhibition - 0.8975 89.75%
CYP1A2 inhibition - 0.8034 80.34%
CYP2C8 inhibition - 0.8015 80.15%
CYP inhibitory promiscuity - 0.9582 95.82%
UGT catelyzed - 0.7000 70.00%
Carcinogenicity (binary) - 0.8700 87.00%
Carcinogenicity (trinary) Non-required 0.6300 63.00%
Eye corrosion - 0.9843 98.43%
Eye irritation - 0.7734 77.34%
Skin irritation - 0.7563 75.63%
Skin corrosion - 0.9310 93.10%
Ames mutagenesis - 0.6500 65.00%
Human Ether-a-go-go-Related Gene inhibition - 0.5290 52.90%
Micronuclear + 0.7100 71.00%
Hepatotoxicity - 0.6217 62.17%
skin sensitisation - 0.8093 80.93%
Respiratory toxicity + 0.6667 66.67%
Reproductive toxicity + 0.8111 81.11%
Mitochondrial toxicity + 0.8500 85.00%
Nephrotoxicity - 0.5564 55.64%
Acute Oral Toxicity (c) III 0.6036 60.36%
Estrogen receptor binding - 0.4904 49.04%
Androgen receptor binding - 0.5972 59.72%
Thyroid receptor binding + 0.6627 66.27%
Glucocorticoid receptor binding + 0.6550 65.50%
Aromatase binding - 0.6066 60.66%
PPAR gamma + 0.6412 64.12%
Honey bee toxicity - 0.9054 90.54%
Biodegradation - 0.6500 65.00%
Crustacea aquatic toxicity - 0.6400 64.00%
Fish aquatic toxicity - 0.3925 39.25%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 97.90% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 94.52% 91.11%
CHEMBL2581 P07339 Cathepsin D 93.80% 98.95%
CHEMBL221 P23219 Cyclooxygenase-1 89.77% 90.17%
CHEMBL3060 Q9Y345 Glycine transporter 2 88.80% 99.17%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 87.74% 85.14%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 87.51% 95.56%
CHEMBL3091268 Q92753 Nuclear receptor ROR-beta 87.03% 95.50%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 85.56% 96.95%
CHEMBL340 P08684 Cytochrome P450 3A4 85.39% 91.19%
CHEMBL5028 O14672 ADAM10 83.80% 97.50%
CHEMBL1821 P08173 Muscarinic acetylcholine receptor M4 82.84% 94.08%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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Cross-Links

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PubChem 122706103
LOTUS LTS0065423
wikiData Q104403066