Minimycin

Details

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Internal ID 11561461-12e4-43cb-998a-8607d5731299
Taxonomy Organic oxygen compounds > Organooxygen compounds > Carbohydrates and carbohydrate conjugates > Glycosyl compounds > C-glycosyl compounds
IUPAC Name 5-[(2S,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,3-oxazine-2,4-dione
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C9H11NO7/c11-1-4-5(12)6(13)7(17-4)3-2-16-9(15)10-8(3)14/h2,4-7,11-13H,1H2,(H,10,14,15)/t4-,5-,6-,7+/m1/s1
InChI Key REFHNSOTFKKRAI-GBNDHIKLSA-N
Popularity 19 references in papers

Physical and Chemical Properties

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Molecular Formula C9H11NO7
Molecular Weight 245.19 g/mol
Exact Mass 245.05355169 g/mol
Topological Polar Surface Area (TPSA) 125.00 Ų
XlogP -2.20
Atomic LogP (AlogP) -2.52
H-Bond Acceptor 7
H-Bond Donor 4
Rotatable Bonds 2

Synonyms

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32388-21-9
2H-1,3-Oxazine-2,4(3H)-dione, 5-beta-D-ribofuranosyl-
(1s)-1,4-anhydro-1-(2,4-dioxo-3,4-dihydro-2h-1,3-oxazin-5-yl)-d-ribitol
5-beta-D-Ribofuranosyl-1,3-oxazine-2,4-dione
Minimycin, Oxazinomycin
5-[(2S,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,3-oxazine-2,4-dione
SCHEMBL6338652
CHEMBL3144030
DTXSID10186102
5-[(2S,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H-1,3-oxazine-2,4-dione
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

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2D Structure of Minimycin

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5419 54.19%
Caco-2 - 0.9589 95.89%
Blood Brain Barrier + 0.5500 55.00%
Human oral bioavailability - 0.6571 65.71%
Subcellular localzation Mitochondria 0.5853 58.53%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8444 84.44%
OATP1B3 inhibitior + 0.9453 94.53%
MATE1 inhibitior - 0.9400 94.00%
OCT2 inhibitior - 0.9250 92.50%
BSEP inhibitior - 0.9711 97.11%
P-glycoprotein inhibitior - 0.9389 93.89%
P-glycoprotein substrate - 0.9630 96.30%
CYP3A4 substrate - 0.5677 56.77%
CYP2C9 substrate - 0.7988 79.88%
CYP2D6 substrate - 0.8495 84.95%
CYP3A4 inhibition - 0.8990 89.90%
CYP2C9 inhibition - 0.9226 92.26%
CYP2C19 inhibition - 0.8861 88.61%
CYP2D6 inhibition - 0.9195 91.95%
CYP1A2 inhibition - 0.6976 69.76%
CYP2C8 inhibition - 0.9381 93.81%
CYP inhibitory promiscuity - 0.9588 95.88%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9000 90.00%
Carcinogenicity (trinary) Non-required 0.6230 62.30%
Eye corrosion - 0.9900 99.00%
Eye irritation - 0.7565 75.65%
Skin irritation - 0.8136 81.36%
Skin corrosion - 0.9436 94.36%
Ames mutagenesis - 0.7100 71.00%
Human Ether-a-go-go-Related Gene inhibition - 0.8245 82.45%
Micronuclear + 0.7959 79.59%
Hepatotoxicity + 0.5406 54.06%
skin sensitisation - 0.8473 84.73%
Respiratory toxicity + 0.5778 57.78%
Reproductive toxicity + 0.8556 85.56%
Mitochondrial toxicity + 0.8500 85.00%
Nephrotoxicity - 0.6077 60.77%
Acute Oral Toxicity (c) III 0.6036 60.36%
Estrogen receptor binding - 0.8043 80.43%
Androgen receptor binding - 0.6122 61.22%
Thyroid receptor binding - 0.6185 61.85%
Glucocorticoid receptor binding - 0.4919 49.19%
Aromatase binding - 0.6769 67.69%
PPAR gamma + 0.5494 54.94%
Honey bee toxicity - 0.8929 89.29%
Biodegradation - 0.7750 77.50%
Crustacea aquatic toxicity - 0.7500 75.00%
Fish aquatic toxicity - 0.6654 66.54%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 92.71% 91.11%
CHEMBL253 P34972 Cannabinoid CB2 receptor 89.35% 97.25%
CHEMBL2581 P07339 Cathepsin D 89.03% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 87.76% 96.09%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 86.71% 95.56%
CHEMBL3401 O75469 Pregnane X receptor 86.58% 94.73%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 85.97% 85.14%
CHEMBL221 P23219 Cyclooxygenase-1 85.25% 90.17%
CHEMBL3137262 O60341 LSD1/CoREST complex 84.09% 97.09%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 82.95% 86.92%
CHEMBL226 P30542 Adenosine A1 receptor 81.74% 95.93%
CHEMBL3038477 P67870 Casein kinase II alpha/beta 80.54% 99.23%
CHEMBL1806 P11388 DNA topoisomerase II alpha 80.17% 89.00%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 80.04% 94.45%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 161746
LOTUS LTS0212775
wikiData Q83057302