Lynamicin B

Details

Top
Internal ID b076a944-852f-4914-8220-ac143cbd0993
Taxonomy Organoheterocyclic compounds > Indoles and derivatives > Indoles
IUPAC Name methyl 3-(5-chloro-1H-indol-3-yl)-4-(5,6-dichloro-1H-indol-3-yl)-1H-pyrrole-2-carboxylate
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C22H14Cl3N3O2/c1-30-22(29)21-20(14-8-26-18-3-2-10(23)4-11(14)18)15(9-28-21)13-7-27-19-6-17(25)16(24)5-12(13)19/h2-9,26-28H,1H3
InChI Key HJXJUNZGSRTQEN-UHFFFAOYSA-N
Popularity 4 references in papers

Physical and Chemical Properties

Top
Molecular Formula C22H14Cl3N3O2
Molecular Weight 458.70 g/mol
Exact Mass 457.015160 g/mol
Topological Polar Surface Area (TPSA) 73.70 Ų
XlogP 6.30
Atomic LogP (AlogP) 7.06
H-Bond Acceptor 2
H-Bond Donor 3
Rotatable Bonds 3

Synonyms

Top
861149-19-1
Methyl 3-(5-chloro-1H-indol-3-yl)-4-(5,6-dichloro-1H-indol-3-yl)-1H-pyrrole-2-carboxylate
RefChem:154646
Methyl 3-(5-chloro-1H-indol-3-yl)-4-(5,6-dichloro-1H-indol-3-yl)-1H-pyrrole-2-carboxylic acid
methyl 4-[5,6-bis(chloranyl)-1H-indol-3-yl]-3-(5-chloranyl-1H-indol-3-yl)-1H-pyrrole-2-carboxylate
CHEMBL489557
orb1690213
SCHEMBL12658014
CHEBI:202931
AKOS040758394
There are more than 10 synonyms. If you wish to see them all click here.

2D Structure

Top
2D Structure of Lynamicin B

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 1.0000 100.00%
Caco-2 - 0.6286 62.86%
Blood Brain Barrier + 0.7500 75.00%
Human oral bioavailability + 0.5571 55.71%
Subcellular localzation Mitochondria 0.7687 76.87%
OATP2B1 inhibitior - 0.8523 85.23%
OATP1B1 inhibitior + 0.8447 84.47%
OATP1B3 inhibitior + 0.9519 95.19%
MATE1 inhibitior - 0.9000 90.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior + 0.9792 97.92%
P-glycoprotein inhibitior - 0.4492 44.92%
P-glycoprotein substrate - 0.8042 80.42%
CYP3A4 substrate + 0.6819 68.19%
CYP2C9 substrate - 0.8032 80.32%
CYP2D6 substrate - 0.8324 83.24%
CYP3A4 inhibition + 0.5525 55.25%
CYP2C9 inhibition + 0.6112 61.12%
CYP2C19 inhibition + 0.7996 79.96%
CYP2D6 inhibition - 0.9484 94.84%
CYP1A2 inhibition + 0.9250 92.50%
CYP2C8 inhibition + 0.6764 67.64%
CYP inhibitory promiscuity + 0.9234 92.34%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.7937 79.37%
Carcinogenicity (trinary) Non-required 0.5579 55.79%
Eye corrosion - 0.9904 99.04%
Eye irritation - 0.9564 95.64%
Skin irritation - 0.8514 85.14%
Skin corrosion - 0.9447 94.47%
Ames mutagenesis - 0.7100 71.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7287 72.87%
Micronuclear + 0.8100 81.00%
Hepatotoxicity + 0.5177 51.77%
skin sensitisation - 0.9173 91.73%
Respiratory toxicity + 0.5444 54.44%
Reproductive toxicity + 0.8000 80.00%
Mitochondrial toxicity - 0.6250 62.50%
Nephrotoxicity + 0.6857 68.57%
Acute Oral Toxicity (c) II 0.5112 51.12%
Estrogen receptor binding + 0.9119 91.19%
Androgen receptor binding + 0.5887 58.87%
Thyroid receptor binding + 0.7859 78.59%
Glucocorticoid receptor binding + 0.8644 86.44%
Aromatase binding + 0.6454 64.54%
PPAR gamma + 0.8384 83.84%
Honey bee toxicity - 0.8482 84.82%
Biodegradation - 0.9250 92.50%
Crustacea aquatic toxicity + 0.6078 60.78%
Fish aquatic toxicity + 0.9356 93.56%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 98.30% 94.45%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.13% 91.11%
CHEMBL4016 P42262 Glutamate receptor ionotropic, AMPA 2 96.11% 86.92%
CHEMBL4208 P20618 Proteasome component C5 94.52% 90.00%
CHEMBL2292 Q13627 Dual-specificity tyrosine-phosphorylation regulated kinase 1A 93.89% 93.24%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 91.93% 94.00%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 91.71% 96.95%
CHEMBL3401 O75469 Pregnane X receptor 90.42% 94.73%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 90.37% 96.09%
CHEMBL2581 P07339 Cathepsin D 90.12% 98.95%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 88.79% 97.21%
CHEMBL3492 P49721 Proteasome Macropain subunit 87.81% 90.24%
CHEMBL1907600 Q00535 Cyclin-dependent kinase 5/CDK5 activator 1 86.73% 93.03%
CHEMBL2095172 P14867 GABA-A receptor; alpha-1/beta-2/gamma-2 86.10% 92.67%
CHEMBL3976 Q9UHL4 Dipeptidyl peptidase II 85.41% 92.29%
CHEMBL2535 P11166 Glucose transporter 83.30% 98.75%
CHEMBL2094127 P06493 Cyclin-dependent kinase 1/cyclin B 83.11% 96.00%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 82.87% 89.62%
CHEMBL3085 P43003 Excitatory amino acid transporter 1 82.68% 94.67%
CHEMBL213 P08588 Beta-1 adrenergic receptor 81.85% 95.56%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 80.91% 96.90%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 11271102
LOTUS LTS0186147
wikiData Q77374370