Herbaceine

Details

Top
Internal ID 94abffbe-f89a-4402-ac7e-ad149359919b
Taxonomy Alkaloids and derivatives > Yohimbine alkaloids
IUPAC Name methyl 6,7-dimethoxy-16-methyl-17-oxa-3,13-diazapentacyclo[11.8.0.02,10.04,9.015,20]henicosa-2(10),4,6,8-tetraene-19-carboxylate
SMILES (Canonical) CC1C2CN3CCC4=C(C3CC2C(CO1)C(=O)OC)NC5=CC(=C(C=C45)OC)OC
SMILES (Isomeric) CC1C2CN3CCC4=C(C3CC2C(CO1)C(=O)OC)NC5=CC(=C(C=C45)OC)OC
InChI InChI=1S/C23H30N2O5/c1-12-16-10-25-6-5-13-15-8-20(27-2)21(28-3)9-18(15)24-22(13)19(25)7-14(16)17(11-30-12)23(26)29-4/h8-9,12,14,16-17,19,24H,5-7,10-11H2,1-4H3
InChI Key IHJNYBLSZYDUNY-UHFFFAOYSA-N
Popularity 0 references in papers

Physical and Chemical Properties

Top
Molecular Formula C23H30N2O5
Molecular Weight 414.50 g/mol
Exact Mass 414.21547206 g/mol
Topological Polar Surface Area (TPSA) 73.00 Ų
XlogP 2.50
Atomic LogP (AlogP) 2.93
H-Bond Acceptor 6
H-Bond Donor 1
Rotatable Bonds 3

Synonyms

Top
Vincaherbinin
Vincaherbinine
Herbacein
IHJNYBLSZYDUNY-UHFFFAOYSA-N
Methyl 10,11-dimethoxy-19-methyloxayohimban-16-carboxylate #
Oxayohimban-16-carboxylic acid, 10,11-dimethoxy-19-methyl-, methyl ester, (16.beta.,19.alpha.)-

2D Structure

Top
2D Structure of Herbaceine

3D Structure

Top

ADMET Properties (via admetSAR 2)

Top
Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.9472 94.72%
Caco-2 + 0.7970 79.70%
Blood Brain Barrier + 0.8250 82.50%
Human oral bioavailability - 0.8714 87.14%
Subcellular localzation Lysosomes 0.6247 62.47%
OATP2B1 inhibitior - 0.8550 85.50%
OATP1B1 inhibitior + 0.8788 87.88%
OATP1B3 inhibitior + 0.7948 79.48%
MATE1 inhibitior - 0.8000 80.00%
OCT2 inhibitior - 0.5139 51.39%
BSEP inhibitior + 0.9315 93.15%
P-glycoprotein inhibitior - 0.4459 44.59%
P-glycoprotein substrate + 0.7947 79.47%
CYP3A4 substrate + 0.6667 66.67%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate + 0.4131 41.31%
CYP3A4 inhibition + 0.5703 57.03%
CYP2C9 inhibition - 0.8402 84.02%
CYP2C19 inhibition - 0.8721 87.21%
CYP2D6 inhibition - 0.7552 75.52%
CYP1A2 inhibition + 0.6952 69.52%
CYP2C8 inhibition - 0.6050 60.50%
CYP inhibitory promiscuity + 0.5357 53.57%
UGT catelyzed - 0.0000 0.00%
Carcinogenicity (binary) - 0.9800 98.00%
Carcinogenicity (trinary) Non-required 0.6279 62.79%
Eye corrosion - 0.9894 98.94%
Eye irritation - 0.9743 97.43%
Skin irritation - 0.7932 79.32%
Skin corrosion - 0.9533 95.33%
Ames mutagenesis - 0.5454 54.54%
Human Ether-a-go-go-Related Gene inhibition + 0.7520 75.20%
Micronuclear - 0.5800 58.00%
Hepatotoxicity - 0.6125 61.25%
skin sensitisation - 0.8918 89.18%
Respiratory toxicity + 0.8778 87.78%
Reproductive toxicity + 0.9444 94.44%
Mitochondrial toxicity + 0.9625 96.25%
Nephrotoxicity - 0.7975 79.75%
Acute Oral Toxicity (c) II 0.6271 62.71%
Estrogen receptor binding + 0.7274 72.74%
Androgen receptor binding + 0.7509 75.09%
Thyroid receptor binding + 0.6288 62.88%
Glucocorticoid receptor binding + 0.7920 79.20%
Aromatase binding - 0.5492 54.92%
PPAR gamma - 0.5236 52.36%
Honey bee toxicity - 0.7627 76.27%
Biodegradation - 0.9000 90.00%
Crustacea aquatic toxicity - 0.5149 51.49%
Fish aquatic toxicity + 0.8853 88.53%

Targets

Top

Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 98.14% 96.09%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 96.96% 91.11%
CHEMBL241 Q14432 Phosphodiesterase 3A 94.40% 92.94%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 94.12% 94.45%
CHEMBL2535 P11166 Glucose transporter 93.20% 98.75%
CHEMBL5747 Q92793 CREB-binding protein 89.89% 95.12%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 89.60% 95.56%
CHEMBL4895 P30530 Tyrosine-protein kinase receptor UFO 87.75% 90.95%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 87.71% 90.71%
CHEMBL3060 Q9Y345 Glycine transporter 2 87.68% 99.17%
CHEMBL4261 Q16665 Hypoxia-inducible factor 1 alpha 87.01% 85.14%
CHEMBL1163125 O60885 Bromodomain-containing protein 4 86.02% 97.31%
CHEMBL340 P08684 Cytochrome P450 3A4 85.92% 91.19%
CHEMBL2635 P51452 Dual specificity protein phosphatase 3 85.77% 94.00%
CHEMBL1806 P11388 DNA topoisomerase II alpha 85.14% 89.00%
CHEMBL1293249 Q13887 Kruppel-like factor 5 85.04% 86.33%
CHEMBL3137262 O60341 LSD1/CoREST complex 83.75% 97.09%
CHEMBL255 P29275 Adenosine A2b receptor 82.75% 98.59%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 82.09% 100.00%
CHEMBL5028 O14672 ADAM10 80.72% 97.50%
CHEMBL2413 P32246 C-C chemokine receptor type 1 80.25% 89.50%

Plants that contains it

Top
Below are displayed all the plants proven (via scientific papers) to contain this compound!
To see more specific details click the taxa you are interested in.
There are no matching plants.

Cross-Links

Top
PubChem 634422
LOTUS LTS0236432
wikiData Q104252060