Halymecin B

Details

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Internal ID 7e586f83-6802-48fb-8d87-3f0eae19c286
Taxonomy Lipids and lipid-like molecules > Fatty Acyls > Fatty acyl glycosides > Rhamnolipids
IUPAC Name (3R,5R)-5-[(3R,5R)-3-acetyloxy-5-[(3R,5R)-3-hydroxy-5-[(3R,5R)-5-hydroxy-3-[(2R,3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxydecanoyl]oxydecanoyl]oxydecanoyl]oxy-3-hydroxydecanoic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C48H86O19/c1-6-10-14-18-32(51)22-38(66-48-47(61)46(60)45(59)40(30-49)67-48)28-43(57)64-36(20-16-12-8-3)24-34(53)26-42(56)65-37(21-17-13-9-4)27-39(62-31(5)50)29-44(58)63-35(19-15-11-7-2)23-33(52)25-41(54)55/h32-40,45-49,51-53,59-61H,6-30H2,1-5H3,(H,54,55)/t32-,33-,34-,35-,36-,37-,38-,39-,40-,45-,46+,47+,48-/m1/s1
InChI Key NOMDKESBADZKCR-WYFDDTMZSA-N
Popularity 2 references in papers

Physical and Chemical Properties

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Molecular Formula C48H86O19
Molecular Weight 967.20 g/mol
Exact Mass 966.57633051 g/mol
Topological Polar Surface Area (TPSA) 303.00 Ų
XlogP 6.00
Atomic LogP (AlogP) 4.45
H-Bond Acceptor 18
H-Bond Donor 8
Rotatable Bonds 39

Synonyms

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There are no found synonyms.

2D Structure

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2D Structure of Halymecin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption - 0.5950 59.50%
Caco-2 - 0.8606 86.06%
Blood Brain Barrier - 0.5750 57.50%
Human oral bioavailability - 0.8286 82.86%
Subcellular localzation Mitochondria 0.8591 85.91%
OATP2B1 inhibitior - 0.8612 86.12%
OATP1B1 inhibitior + 0.8345 83.45%
OATP1B3 inhibitior + 0.8901 89.01%
MATE1 inhibitior - 0.9800 98.00%
OCT2 inhibitior - 0.7292 72.92%
BSEP inhibitior + 0.8375 83.75%
P-glycoprotein inhibitior + 0.7330 73.30%
P-glycoprotein substrate - 0.5195 51.95%
CYP3A4 substrate + 0.6570 65.70%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8929 89.29%
CYP3A4 inhibition + 0.5595 55.95%
CYP2C9 inhibition - 0.8859 88.59%
CYP2C19 inhibition - 0.8044 80.44%
CYP2D6 inhibition - 0.9287 92.87%
CYP1A2 inhibition - 0.8763 87.63%
CYP2C8 inhibition - 0.6393 63.93%
CYP inhibitory promiscuity - 0.9810 98.10%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.9600 96.00%
Carcinogenicity (trinary) Non-required 0.7834 78.34%
Eye corrosion - 0.9923 99.23%
Eye irritation - 0.8986 89.86%
Skin irritation - 0.7830 78.30%
Skin corrosion - 0.9671 96.71%
Ames mutagenesis - 0.7700 77.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7468 74.68%
Micronuclear - 0.9200 92.00%
Hepatotoxicity - 0.6095 60.95%
skin sensitisation - 0.9199 91.99%
Respiratory toxicity - 0.6111 61.11%
Reproductive toxicity - 0.7556 75.56%
Mitochondrial toxicity - 0.5000 50.00%
Nephrotoxicity + 0.7085 70.85%
Acute Oral Toxicity (c) III 0.5988 59.88%
Estrogen receptor binding + 0.7713 77.13%
Androgen receptor binding + 0.6683 66.83%
Thyroid receptor binding - 0.5422 54.22%
Glucocorticoid receptor binding + 0.6250 62.50%
Aromatase binding + 0.5862 58.62%
PPAR gamma + 0.6892 68.92%
Honey bee toxicity - 0.8079 80.79%
Biodegradation - 0.7000 70.00%
Crustacea aquatic toxicity - 0.5892 58.92%
Fish aquatic toxicity + 0.8443 84.43%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL2581 P07339 Cathepsin D 98.63% 98.95%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 96.80% 96.09%
CHEMBL3060 Q9Y345 Glycine transporter 2 96.21% 99.17%
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 93.38% 91.11%
CHEMBL5255 O00206 Toll-like receptor 4 92.55% 92.50%
CHEMBL3359 P21462 Formyl peptide receptor 1 92.20% 93.56%
CHEMBL3892 Q99500 Sphingosine 1-phosphate receptor Edg-3 89.47% 97.29%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 89.33% 96.47%
CHEMBL3776 Q14790 Caspase-8 89.04% 97.06%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 88.56% 96.00%
CHEMBL2274 Q9H228 Sphingosine 1-phosphate receptor Edg-8 88.07% 100.00%
CHEMBL253 P34972 Cannabinoid CB2 receptor 87.64% 97.25%
CHEMBL1907603 Q05586 Glutamate NMDA receptor; GRIN1/GRIN2B 87.57% 95.89%
CHEMBL3401 O75469 Pregnane X receptor 86.85% 94.73%
CHEMBL3145 P42338 PI3-kinase p110-beta subunit 86.43% 98.75%
CHEMBL1293316 Q9HBX9 Relaxin receptor 1 85.90% 82.50%
CHEMBL4227 P25090 Lipoxin A4 receptor 85.35% 100.00%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 84.86% 96.95%
CHEMBL2955 O95136 Sphingosine 1-phosphate receptor Edg-5 83.59% 92.86%
CHEMBL2111367 P27986 PI3-kinase p110-alpha/p85-alpha 83.49% 94.33%
CHEMBL2001 Q9H244 Purinergic receptor P2Y12 83.16% 96.00%
CHEMBL340 P08684 Cytochrome P450 3A4 82.82% 91.19%
CHEMBL1944495 P28065 Proteasome subunit beta type-9 82.25% 97.50%
CHEMBL4769 O95749 Geranylgeranyl pyrophosphate synthetase 80.87% 92.08%
CHEMBL4187 Q99250 Sodium channel protein type II alpha subunit 80.17% 95.50%
CHEMBL4657 Q6V1X1 Dipeptidyl peptidase VIII 80.03% 97.21%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 10653493
LOTUS LTS0070612
wikiData Q77514126